d1e3pa3d1tis__

Motif (click icon to enlarge)	SCOPid	Range	SCOP Class	SCOP Fold	SCOP Superfamily	SCOP Family	Protein
1e3p_Ah	d1e3pa3	A3-A44,A128-A151,A221-A253	Alpha and beta proteins (a+b)	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Ribonuclease PH domain 1-like	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4
1tis__c	d1tis__	134-178,179-204,105-133	Alpha and beta proteins (a+b)	Thymidylate synthase/dCMP hydroxymethylase	Thymidylate synthase/dCMP hydroxymethylase	Thymidylate synthase/dCMP hydroxymethylase	Thymidylate synthase

Justification for analogy
The motif in 1e3p: first two strands come from insertion, third strand and first helix come from the core of the "Ribosomal protein S5 domain 2-like" superfamily, last helix comes from C-terminal extension of another domain. hybrid motif.

In the alignments below, two upper-case letters are aligned, while two lower-case letters are NOT aligned. The two sequences in an alignment are NOT continuous in most cases (see their ranges). The superpositions are re-constructed from the corresponding alignments by minimizing the overall RMSD. In a PDB-format superposition file, the first domain is represented by chain S and the second domain is represented by chain A.

MANUAL alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1e3p_Ah   neTHY-AEAVIDnga--------fgtRTIRFETGrlarqaaGSAVAYLDdd------npdhLYDVVAINAASASTQLAglpteevvaAGLDAAKPFi--KVLCKAQADLAAKAakp
1tis__c   --NDRrQIVSAWnpaelkymalppchMFYQFNVRn------GYLDLQWYqrsvdvflglpfNIASYATLVHIVAKMCNl-----lgpIYGKQWRDFggvDQIIEVIDRIKKLP---

DALI alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1e3p_Ah   netHYAEAVIDNGA--------fgtRTIRFETGRLarqaagSAVAYLD------ddNPDHLYDVVAINAASASTQLAglpteevvaaGLDA-AKPFI-----KVLCKAQADLAAKAakp
1tis__c   -ndRRQIVSAWNPAelkymalppchMFYQFNVRNG------YLDLQWYqrsvdvflGLPFNIASYATLVHIVAKMCN---------lLGPIyGKQWRdfggvDQIIEVIDRIKKLP---

TM alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1e3p_Ah   NET-HYAEAVI---DNGAFGTR-TIRFETGRLARQAAGSAVAYLDDDNPDH----LYDVVA-INAASASTQLA--GL-PTEEVVAAGLDAAKPFIKVLCK-----AQA-DLAAKAAK--P
1tis__c   NDRRQIVSAWNPAELKYMALPPCHMFYQFNV--RNGYLDLQWYQR----SVDVFLGLPFNIAS-YATLVHIVAKMCNL-----------L-GPIYGKQWRDFGGVDQIIEVIDRIKKLP-

FAST alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1e3p_Ah   NETHY----AEAVIDNGAFGTR-------------TIRFETGRLARQAAG---SAVAYLDDDNPDHL----------YDVVAINAASASTQLAGLPTEEVVAAGLD--------AAKPFIK-------VLCKAQADLAAKAAKP
1tis__c   -----NDRRQIVSAWNP-----AELKYMALPPCHMFYQFNV---------RNGYLDLQW--------YQRSVDVFLGLPFNIASYATLVHIVA-------------KMCNLLGPIYGKQW-RDFGGVDQIIEVIDRIKKLP---