d1gc5a_d1omha_

Motif (click icon to enlarge)	SCOPid	Range	SCOP Class	SCOP Fold	SCOP Superfamily	SCOP Family	Protein
1gc5_Ah	d1gc5a_	A346-A389,A423-A467	Alpha and beta proteins (a/b)	Ribokinase-like	Ribokinase-like	ADP-specific Phosphofructokinase/Glucokinase	ADP-dependent glucokinase
1omh_Ac	d1omha_	A2-A132,A133-A293	Alpha and beta proteins (a+b)	Origin of replication-binding domain, RBD-like	Origin of replication-binding domain, RBD-like	Relaxase domain	TrwC relaxase

Justification for analogy
comparing d1gc5a_ & d1rkd__ (other family, but sure homolog to d1gc5a_, since they are very similar, including an inserted domain). The insertion that forms part of the DCoH motif is absent in d1rkd__. So the motif in d1gc5a_ is a hybrid.

In the alignments below, two upper-case letters are aligned, while two lower-case letters are NOT aligned. The two sequences in an alignment are NOT continuous in most cases (see their ranges). The superpositions are re-constructed from the corresponding alignments by minimizing the overall RMSD. In a PDB-format superposition file, the first domain is represented by chain S and the second domain is represented by chain A.

MANUAL alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1gc5_Ah   ieriHFHTY------------------------------------------------------------------GYYLALTQy----------------rGEEVRDALLFASLAAAakamkgnle---------------GLIDM----VDRQLAFVPTKIVaspk----------stvgIGDTISSSAFVSEFGMRKR---------------------------------------------------------------------------------------
1omh_Ac   ----LSHMVltrqdigraasyygdasewqgkgaeelglsgevdskrfrellagnigeghrimrsatrqdskerigLDLTFSAPksvslqalvagdaeiikaHDRAVARTLEQAEARAqarqkiq--gktriettgnlvigkFRHETsrerDPQLHTHAVILNMtkrsdgqwralkndeivkATRYLGAVYNAELAHELQKlgyqlrygkdgnfdlahidrqqiegfskrteqiaewyaargldpnsvsleqkqaakvlsrakktsvdrealraewqatakelgidfs

DALI alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1gc5_Ah   ierihFHTY--------------------------------------------------------------------GYYLAL----TQYR--------GEEVRDALLFASLAAAAKAM-----------------kgnleGLIDM--VDRQLAFVPTKIVA---------SPKSTV--GIGDTISSSAFVSEFGMRKR---------------------------------------------------------------------------------------
1omh_Ac   -----LSHMvltrqdigraasyygdasewqgkgaeelglsgevdskrfrellagnigeghrimrsatrqdskeriglDLTFSApksvSLQAlvagdaeiIKAHDRAVARTLEQAEARAQarqkiqgktriettgnlvigkfRHETSreRDPQLHTHAVILNMtkrsdgqwrALKNDEivKATRYLGAVYNAELAHELQKlgyqlrygkdgnfdlahidrqqiegfskrteqiaewyaargldpnsvsleqkqaakvlsrakktsvdrealraewqatakelgidfs

TM alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1gc5_Ah   IERIHFHT-----------------------------------------------------------------------YGYYLALT--QY---R-GEEVRDALLFASLAAAAKAMKG-------------------------NLEGLI----DMVDRQLAFVPTKIV-A-------------SPKS--TV-GIGDTISSSAFVSEFGMRK-------------------------------------------------------------------------------------R
1omh_Ac   ------LSHMVLTRQDIGRAASYYGDASEWQGKGAEELGLSGEVDSKRFRELLAGNIGEGHRIMRSATRQDSKERIGLDLTFSAPKSVSLQALVAGDAEIIKAHDRAVARTLEQAEARAQARQKIQGKTRIETTGNLVIGKFR---HETSRER-----DPQLHTHAVILNMTKRSDGQWRALKNDEIVKATRYLGAVYNAELAHELQK-LGYQLRYGKDGNFDLAHIDRQQIEGFSKRTEQIAEWYAARGLDPNSVSLEQKQAAKVLSRAKKTSVDREALRAEWQATAKELGIDFS-

FAST alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1gc5_Ah   IERIHFHTYG--------------------------------------------------------------------------YYLALTQ---------YRGEEVRDALLFASLAAAAKAMKGNLEGLIDMVDR----------------------------------QLAFVPTKIVA-------------SPKS----TVGIGDTISSSAFVSEFGMRKR--------------------------------------------------------------------------------------
1omh_Ac   ----------LSHMVLTRQDIGRAASYYGDASEWQGKGAEELGLSGEVDSKRFRELLAGNIGEGHRIMRSATRQDSKERIGLDLTFSAP--KSVSLQALVAGDAEIIKAHDRAVARTLEQAEA------------RAQARQKIQGKTRIETTGNLVIGKFRHETSRERDPQLHTH-AVILNMTKRSDGQWRALKNDEIVKATRYLGAVYNAELAHELQKL---GYQLRYGKDGNFDLAHIDRQQIEGFSKRTEQIAEWYAARGLDPNSVSLEQKQAAKVLSRAKKTSVDREALRAEWQATAKELGIDFS