d1h6da2d1kjka_

Motif (click icon to enlarge)	SCOPid	Range	SCOP Class	SCOP Fold	SCOP Superfamily	SCOP Family	Protein
1h6d_Ah	d1h6da2	A213-A229,A337-A367	Alpha and beta proteins (a+b)	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain	Glucose 6-phosphate dehydrogenase-like	Glucose-fructose oxidoreductase
1kjk_Ac	d1kjka_	A40-A59,A11-A39	Alpha and beta proteins (a+b)	DNA-binding domain	DNA-binding domain	lambda integrase N-terminal domain	lambda integrase N-terminal domain

Justification for analogy
The motif in 1h6d: compared to d1lc0a2 (same superfamily), two strands are insertion. Hybrid. See d1drw_2 for the consensus of this fold as described in SCOP.

In the alignments below, two upper-case letters are aligned, while two lower-case letters are NOT aligned. The two sequences in an alignment are NOT continuous in most cases (see their ranges). The superpositions are re-constructed from the corresponding alignments by minimizing the overall RMSD. In a PDB-format superposition file, the first domain is represented by chain S and the second domain is represented by chain A.

MANUAL alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1h6d_Ah   dpMNRAAVKLIRENqlg-------kaVLLMDPatgyyQNLISVQTP--GHANQSMMp
1kjk_Ac   --DRRIAITEAIQAnielfsghdlppNLYIRN-----NGYYCYRDPrtGKEFGLGR-

DALI alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1h6d_Ah   --DPMNRAAVKLIReNQLGK--avlLMDPatGYYQNLISVQTpgHANQSMM-p
1kjk_Ac   drRIAITEAIQANI-ELFSGhdlppNLYI-rNNGYYCYRDPR--TGKEFGLgr

TM alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1h6d_Ah   --DPMNRAAVKLIRENQLG-KA---VLLMDP---ATGYYQNLISVQTPGH-ANQSMM-P
1kjk_Ac   DRRIAITEAIQANI--ELFSGHDLP-PNLYIRNN----GYYCYRDPR--TGKEFGLGR-

FAST alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1h6d_Ah   DPMNRAAVKLIRENQLGKAV----------LLMDPATGYYQ-NLISVQTP--GHANQSMMP-
1kjk_Ac   --DRRIAITEAIQ-ANIE--LFSGHDLPPNLYIRN------NGYYCYRDPRTGKEFGLG--R