d1hi9a_d1rpua_

Motif
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SCOPidRangeSCOP ClassSCOP FoldSCOP SuperfamilySCOP FamilyProtein
1hi9_Ah
d1hi9a_A119-A145,A210-A225,A245-A274Alpha and beta proteins (a/b)Dipeptide transport proteinDipeptide transport proteinDipeptide transport proteinZn-dependent D-aminopeptidase DppA
1rpu_Ac
d1rpua_A55-A104,A105-A118,A119-A152Alpha and beta proteins (a+b)Tombusvirus P19 core protein, VP19Tombusvirus P19 core protein, VP19Tombusvirus P19 core protein, VP19Tombusvirus P19 core protein, VP19

Justification for analogy
The motif in 1hi9 comes from two insertions and a Rossmann helix. Hybrid motif.


Alignment-based scores
AlignerAligned LengthSequence IdentityRMSDGDT-TSCOMPASS
manual620.064522.8807559.67742-0.96847
dali640.062502.8804259.76562-0.97920
tm680.058823.0740858.82353-1.08842
fast580.068973.1327558.18966-0.77706

In the alignments below, two upper-case letters are aligned, while two lower-case letters are NOT aligned. The two sequences in an alignment are NOT continuous in most cases (see their ranges). The superpositions are re-constructed from the corresponding alignments by minimizing the overall RMSD. In a PDB-format superposition file, the first domain is represented by chain S and the second domain is represented by chain A.

MANUAL alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1hi9_Ah   -fgvRHFYIN----DRPV---------------gelGLNAYVAGYYD---pltppDRPVLSIEFANTTVQFQAK--DMLEAYQAMLVMTELAMRTSFC--
1rpu_Ac   nplgFKESWGfgkvVFKRylrydrteaslhrvlgswTGDSVNYAASRflg--anqVGCTYSIRFRGVSVTISGGsrTLQHLCEMAIRSKQELLQLTPVev

DALI alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1hi9_Ah   -fgvRHFYIN----DRPV---------------gELGLNAYVAGYYD-pltppDRPVLSIEFANTTVQFQAKD--MLEAYQAMLVMTELAMRTSFC--
1rpu_Ac   nplgFKESWGfgkvVFKRylrydrteaslhrvlgSWTGDSVNYAASRflganqVGCTYSIRFRGVSVTISGGSrtLQHLCEMAIRSKQELLQLTPVev

TM alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1hi9_Ah   ---FGVRHFYIN----DRPV-------------G--ELGLNAYVAGYYDPLTP---PDRPVLSIEFANT-TVQFQAKD--MLEAYQAMLVMTELAMRTSFC--
1rpu_Ac   NPL--GFKESWGFGKVVFKRYLRYDRTEASLHRVLGSWTGDSVNYAA-S-RFLGANQVGCTYSIRF-RGVSVTISGGSRTLQHLCEMAIRSKQELLQLTPVEV

FAST alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1hi9_Ah   FGVR-----HFYI--NDRPVGELG--------------------LNAYVAGYYDPLTPPD-------RPVLSIEFANTTVQFQAKD---MLEAYQAMLVMTELAMRTSFC---
1rpu_Ac   ----NPLGFKESWGFGKVVFK---RYLRYDRTEASLHRVLGSWTGDSVNYAASR------FLGANQVGCTYSIRFRGVSVTISGG-SRTLQHLCEMAIRSKQELLQLTP-VEV