d1hi9a_d1rpua_

Motif (click icon to enlarge)	SCOPid	Range	SCOP Class	SCOP Fold	SCOP Superfamily	SCOP Family	Protein
1hi9_Ah	d1hi9a_	A119-A145,A210-A225,A245-A274	Alpha and beta proteins (a/b)	Dipeptide transport protein	Dipeptide transport protein	Dipeptide transport protein	Zn-dependent D-aminopeptidase DppA
1rpu_Ac	d1rpua_	A55-A104,A105-A118,A119-A152	Alpha and beta proteins (a+b)	Tombusvirus P19 core protein, VP19	Tombusvirus P19 core protein, VP19	Tombusvirus P19 core protein, VP19	Tombusvirus P19 core protein, VP19

Justification for analogy
The motif in 1hi9 comes from two insertions and a Rossmann helix. Hybrid motif.

In the alignments below, two upper-case letters are aligned, while two lower-case letters are NOT aligned. The two sequences in an alignment are NOT continuous in most cases (see their ranges). The superpositions are re-constructed from the corresponding alignments by minimizing the overall RMSD. In a PDB-format superposition file, the first domain is represented by chain S and the second domain is represented by chain A.

MANUAL alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1hi9_Ah   -fgvRHFYIN----DRPV---------------gelGLNAYVAGYYD---pltppDRPVLSIEFANTTVQFQAK--DMLEAYQAMLVMTELAMRTSFC--
1rpu_Ac   nplgFKESWGfgkvVFKRylrydrteaslhrvlgswTGDSVNYAASRflg--anqVGCTYSIRFRGVSVTISGGsrTLQHLCEMAIRSKQELLQLTPVev

DALI alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1hi9_Ah   -fgvRHFYIN----DRPV---------------gELGLNAYVAGYYD-pltppDRPVLSIEFANTTVQFQAKD--MLEAYQAMLVMTELAMRTSFC--
1rpu_Ac   nplgFKESWGfgkvVFKRylrydrteaslhrvlgSWTGDSVNYAASRflganqVGCTYSIRFRGVSVTISGGSrtLQHLCEMAIRSKQELLQLTPVev

TM alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1hi9_Ah   ---FGVRHFYIN----DRPV-------------G--ELGLNAYVAGYYDPLTP---PDRPVLSIEFANT-TVQFQAKD--MLEAYQAMLVMTELAMRTSFC--
1rpu_Ac   NPL--GFKESWGFGKVVFKRYLRYDRTEASLHRVLGSWTGDSVNYAA-S-RFLGANQVGCTYSIRF-RGVSVTISGGSRTLQHLCEMAIRSKQELLQLTPVEV

FAST alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1hi9_Ah   FGVR-----HFYI--NDRPVGELG--------------------LNAYVAGYYDPLTPPD-------RPVLSIEFANTTVQFQAKD---MLEAYQAMLVMTELAMRTSFC---
1rpu_Ac   ----NPLGFKESWGFGKVVFK---RYLRYDRTEASLHRVLGSWTGDSVNYAASR------FLGANQVGCTYSIRFRGVSVTISGG-SRTLQHLCEMAIRSKQELLQLTP-VEV