| Motif (click icon to enlarge) | SCOPid | Range | SCOP Class | SCOP Fold | SCOP Superfamily | SCOP Family | Protein |
|---|---|---|---|---|---|---|---|
1is8_Ah |
d1is8a_ | A115-A151,A189-A201,A211-A241 | Alpha and beta proteins (a+b) | T-fold | Tetrahydrobiopterin biosynthesis enzymes-like | GTP cyclohydrolase I | GTP cyclohydrolase I |
1umw_Ac |
d1umwa1 | A407-A438,A439-A446,A447-A500 | Alpha and beta proteins (a+b) | Polo-box domain | Polo-box domain | Polo-box duplicated region | Serine/threonine-protein kinase plk C-terminal domain |
Justification for analogy
The motif in 1is8: the helix is not in the T-fold core, compared to 1r51 or 1b66 (same superfamily). hybrid motif.
| Alignment-based scores | |||||
|---|---|---|---|---|---|
| Aligner | Aligned Length | Sequence Identity | RMSD | GDT-TS | COMPASS |
| manual | 50 | 0.02000 | 2.68376 | 66.00000 | -12.61110 |
| dali | 51 | 0.03922 | 2.72247 | 64.70588 | -13.09496 |
| tm | 36 | 0.13889 | 2.43070 | 71.52778 | -9.86670 |
| fast | 37 | 0.02703 | 1.94470 | 71.62162 | -12.86906 |
In the alignments below, two upper-case letters are aligned, while two lower-case letters are NOT aligned. The two sequences in an alignment are NOT continuous in most cases (see their ranges). The superpositions are re-constructed from the corresponding alignments by minimizing the overall RMSD. In a PDB-format superposition file, the first domain is represented by chain S and the second domain is represented by chain A.
MANUAL alignment PDB format superposition aligned motifs in PyMol whole structures in PyMol 1is8_Ah ----------edHDEMVIVKdIDmfsmcehhlvpfvGRVHIGYLPNkqpAGVGVVIEathkmnskTVTSTMLGvf------------reDPKTREEFLTLIRS--------------- 1umw_Ac pifwvskwvdysDKYGLGYQ-LC-------------DNSVGVLFND---STRLILYN-------dGDSLQYIErdgtesyltvsshpnsLMKKITLLKYFRNYmsehllkaganitpr
DALI alignment PDB format superposition aligned motifs in PyMol whole structures in PyMol 1is8_Ah ----------edHDEMVIVKDIDmfsmcehhlvpfvgRVHIGYLPnkqPAGVGVVIEAthkmnsktVTSTMLG------------vfrEDPKTREEFLTLIRS--------------- 1umw_Ac pifwvskwvdysDKYGLGYQLCD--------------NSVGVLFN---DSTRLILYND-------gDSLQYIErdgtesyltvsshpnSLMKKITLLKYFRNYmsehllkaganitpr
TM alignment PDB format superposition aligned motifs in PyMol whole structures in PyMol 1is8_Ah ----------------------EDHDEMVIVKDIDMFSMCEHHLVPFVGRVHIGYLPNKQPAGVGVVIEATHKMNSKTVTSTMLG------------------------------------VFREDPKTREEFLTLIRS 1umw_Ac PIFWVSKWVDYSDKYGLGYQLC---DNSVGVL-FND-------------STRLILYNDG-D-SLQYIER--------DGTESYLTVSSHPNSLMKKITLLKYFRNYMSEHLLKAGANITPR------------------
FAST alignment PDB format superposition aligned motifs in PyMol whole structures in PyMol 1is8_Ah EDHDEMVIV------------------KDIDMFSMCEHHLVPFVG-RVHIGYLPNKQP-AGVGVVIEATHKMNSKTV----TSTMLGVFRED-----------------PKTREEFLTLIRS---------------- 1umw_Ac ---------PIFWVSKWVDYSDKYGLGYQLC--------------DNSVGVLFN----DSTRLILY-----------NDGDSLQYIE-----RDGTESYLTVSSHPNSLMKKITLLKYFRN-YMSEHLLKAGANITPR