d1jnwa_d1ew4a_

Motif (click icon to enlarge)	SCOPid	Range	SCOP Class	SCOP Fold	SCOP Superfamily	SCOP Family	Protein
1jnw_Ah	d1jnwa_	A47-A57,A99-A116,A186-A218,A19-A46	All beta proteins	FMN-binding split barrel	FMN-binding split barrel	PNP-oxidase like	Pyridoxine 5'-phoshate oxidase (PNP oxidase)
1ew4_Ac	d1ew4a_	A1-A36,A37-A56,A57-A82,A83-A106	Alpha and beta proteins (a+b)	N domain of copper amine oxidase-like	Frataxin-like	Frataxin-like	CyaY

Justification for analogy
The motif in 1jnw: hybrid motif; compare to 1i0r, the core is a barrel;

In the alignments below, two upper-case letters are aligned, while two lower-case letters are NOT aligned. The two sequences in an alignment are NOT continuous in most cases (see their ranges). The superpositions are re-constructed from the corresponding alignments by minimizing the overall RMSD. In a PDB-format superposition file, the first domain is represented by chain S and the second domain is represented by chain A.

MANUAL alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1jnw_Ah   -------------------------ladpTAMVVATVSLLFPWHtLERQVMVIG------EQIEFWqggehrlhdRFLYQREN----DAWKidrlapkgglrrrdlpADPLTLFERWLSQACEak----
1ew4_Ac   mndsefhrladqlwltieerlddwdgdsdIDCEINGGVLTITFE-NGSKIIINRqeplhqVWLATK---------QGGYHFDLkgdeWICDr-------------sgETFWDLLEQAATQQAGetvsfr

DALI alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1jnw_Ah   -------------------------LADPTAMVVATVSLLFPWhTLERQVMVIG-----EQIEFWQggehrlhDRFLYQREN-DAWKIdrlapkgglrrrdlpADPLTLFERWLSQ-ACEA---k
1ew4_Ac   mndsefhrladqlwltieerlddwdGDSDIDCEINGGVLTITF-ENGSKIIINRqeplhQVWLATK-------QGGYHFDLKgDEWIC-----------drsgETFWDLLEQAATQqAGETvsfr

TM alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1jnw_Ah   ---------------------LADPTAMVVAT---VSLLFPWHTLERQVMVIGE-QIEFWQGGE--HRLHDRFLYQRENDAWKIDRLAP-----------------------------------KGGLRRRDLPADPLTLFERWLSQACEAK
1ew4_Ac   MNDSEFHRLADQLWLTIEERL-------DDWDGDSDIDCEIN--GGVLTITFENGSKIIINRQEPLH-QVWLATK--------QGGYHFDLKGDEWICDRSGETFWDLLEQAATQQAGETVSFR----------------------------

FAST alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1jnw_Ah   LADPT------------------------------AMVVATVSLLFPWHTLERQVMVIG-----EQIEFWQGGEHRLH--DRFLYQRENDAWKIDRLAPKGGLRRRDLPA----DPLTLFERWLSQACEAK-------
1ew4_Ac   -----MNDSEFHRLADQLWLTIEERLDDWDGDSDIDCEINGGVLTITF-ENGSKIIIN-RQEPLHQVWLAT-------KQGGYHFDLKGDEWICD---------------RSGETFWDLLEQAATQQA---GETVSFR