d1mw5a_d1bco_1

Motif (click icon to enlarge)	SCOPid	Range	SCOP Class	SCOP Fold	SCOP Superfamily	SCOP Family	Protein
1mw5_Ai	d1mw5a_	A13-A19,A118-A130,A141-A153,B13-B19,B118-B130,B141-B153	Alpha and beta proteins (a+b)	Hypothetical protein HI1480	Hypothetical protein HI1480	Hypothetical protein HI1480	Hypothetical protein HI1480
1bco__c	d1bco_1	481-499,500-509,510-526,527-539,540-550,551-560	All beta proteins	mu transposase, C-terminal domain	mu transposase, C-terminal domain	mu transposase, C-terminal domain	mu transposase, C-terminal domain

Justification for analogy
The motif in 1mw5: barrel formed by two monomers, interface motif.

In the alignments below, two upper-case letters are aligned, while two lower-case letters are NOT aligned. The two sequences in an alignment are NOT continuous in most cases (see their ranges). The superpositions are re-constructed from the corresponding alignments by minimizing the overall RMSD. In a PDB-format superposition file, the first domain is represented by chain S and the second domain is represented by chain A.

MANUAL alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1mw5_Ai   ------------QPVKLYSnlpAPFYVLLPes--DKALPYVRVSmey----QPVKLYS----nlpaPFYVLLPESdkALPYVRVSmey
1bco__c   teeqkrmlllpaEAVNVSR---KGEFTLKVggslKGAKNVYYNMalmnagvKKVVVRFdpqq--lhSTVYCYTLDgrFICEAECL---

DALI alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1mw5_Ai   ------------QPVKLYSnlpapfYVLL---pesDKALPYVRVSM----eyQPVKLYS--nlpAPFYVLLPESdkaLPYVRVSmey
1bco__c   teeqkrmlllpaEAVNVSR----kgEFTLkvggslKGAKNVYYNMAlmnagvKKVVVRFdpqqlHSTVYCYTLDgrfICEAECL---

TM alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1mw5_Ai   ------------QPVKLYSNLPAPFYVLLP--------ESDKALPYVRVSM------EYQPVKLYS----NLPAPFYVLLPES--DKALPYVRVSMEY
1bco__c   TEEQKRMLLLPAEAVNVSR----KGE-FTLKVGGSLKG----AKNVYYNMALMNAGV--KKVVVRFDPQQ--LHSTVYCYTLDGR--FICEAECL---

FAST alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1mw5_Ai   ------------QPVKLYSNLPAPFYVLLPESDK--------------ALPYVRVSMEY-------QPVKLYSNLPA-------PFYVLLPESDKALP-----YVRVSMEY
1bco__c   TEEQKRMLLLPAEAVNVSR---------------KGEFTLKVGGSLKGAKNVYYNM---ALMNAGVKKVVVR-----FDPQQLHSTVYCYTLD-----GRFICEAECL---