| Motif (click icon to enlarge) | SCOPid | Range | SCOP Class | SCOP Fold | SCOP Superfamily | SCOP Family | Protein |
|---|---|---|---|---|---|---|---|
1n7v_Ah |
d1n7va_ | A353-A418 | All beta proteins | Adsorption protein p2 | Adsorption protein p2 | Adsorption protein p2 | Adsorption protein p2 |
1izn_Ac |
d1izna_ | A117-A281 | Multi-domain proteins (alpha and beta) | Subunits of heterodimeric actin filament capping protein Capz | Subunits of heterodimeric actin filament capping protein Capz | Capz alpha-1 subunit | Capz alpha-1 subunit |
Justification for analogy
The motif in 1n7v: The helix is a deteriorated blade in the propeller. This is a hybrid motif and can be analog to similar motifs in
SCOP a+b class.
| Alignment-based scores | |||||
|---|---|---|---|---|---|
| Aligner | Aligned Length | Sequence Identity | RMSD | GDT-TS | COMPASS |
| manual | 58 | 0.08621 | 3.15911 | 56.03448 | -0.58632 |
| dali | 61 | 0.08197 | 3.37379 | 56.96721 | -0.74124 |
| tm | 48 | 0.02083 | 3.97072 | 46.87500 | -1.24861 |
| fast | 45 | 0.06667 | 2.18039 | 68.33333 | -0.96469 |
In the alignments below, two upper-case letters are aligned, while two lower-case letters are NOT aligned. The two sequences in an alignment are NOT continuous in most cases (see their ranges). The superpositions are re-constructed from the corresponding alignments by minimizing the overall RMSD. In a PDB-format superposition file, the first domain is represented by chain S and the second domain is represented by chain A.
MANUAL alignment PDB format superposition aligned motifs in PyMol whole structures in PyMol 1n7v_Ah -----------------------------------ayYAVYKTDG---------YGGATCFIASGG--AGISALVQLQD-----------NSVlDVLYYSLPLslgGSKAAIDEWVANNCGlf---------------------------------------------- 1izn_Ac lkqwrdacdsalrayvkdhypngfctvygksidgqqtIIACIESHqfqpknfwnGRWRSEWKFTITppTAQVAAVLKIQvhyyedgnvqlVSH-KDIQDSVQV---SSDVQTAKEFIKIIEnaeneyqtaisenyqtmsdttfkalrrqlpvtrtkidwnkilsykigk
DALI alignment PDB format superposition aligned motifs in PyMol whole structures in PyMol 1n7v_Ah -----------------------------------AYYAVYKTDG---------YGGATCFIASGG--AGISALVQLQD----------NSVLDVLYYSLPLSlggSKAAIDEWVANNCG----------------------------------------------lf 1izn_Ac lkqwrdacdsalrayvkdhypngfctvygksidgqQTIIACIESHqfqpknfwnGRWRSEWKFTITppTAQVAAVLKIQvhyyedgnvqLVSHKDIQDSVQVS---SDVQTAKEFIKIIEnaeneyqtaisenyqtmsdttfkalrrqlpvtrtkidwnkilsykigk
TM alignment PDB format superposition aligned motifs in PyMol whole structures in PyMol 1n7v_Ah -----------------------------------------AYYAVYKTDGYGGATCFIASGG--------------AGISALVQLQDNSVLDVLYYSL---------------------PLSLGGSKAA--IDEW---VANN--C----------------------------------GLF 1izn_Ac LKQWRDACDSALRAYVKDHYPNGFCTVYGKSIDGQQTIIACIESHQFQP-K--NFWNGRWRSEWKFTITPPTAQVAAVLKIQVHYYE--DGNVQLVSHKDIQDSVQVSSDVQTAKEFIKI-IENAE---NEY---QTAI---SENYQTMSDTTFKALRRQLPVTRTKIDWNKILSYKIGK---
FAST alignment PDB format superposition aligned motifs in PyMol whole structures in PyMol 1n7v_Ah AY---------------------------------------YAVYKTDGY-------GGATCFIASGGAG----------ISALVQLQDNSVL-----------DVLYYSLPLSLGGS---------KAAIDEWVANNCGLF-------------------------------------------- 1izn_Ac --LKQWRDACDSALRAYVKDHYPNGFCTVYGKSIDGQQTIIACIESHQ--FQPKNFWNGRWRSEWK----FTITPPTAQVAAVLKIQV-----HYYEDGNVQLVSHKDIQDS------VQVSSDVQTAKEFIKIIENAEN--EYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILSYKIGK