d1o17d2d1jyra_

Motif (click icon to enlarge)	SCOPid	Range	SCOP Class	SCOP Fold	SCOP Superfamily	SCOP Family	Protein
1o17_Dh	d1o17d2	D182-D248,D280-D303	Alpha and beta proteins (a/b)	Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain	Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain	Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain	Anthranilate phosphoribosyltransferase (TrpD)
1jyr_Ac	d1jyra_	A56-A120,A121-A151	Alpha and beta proteins (a+b)	SH2-like	SH2 domain	SH2 domain	Growth factor receptor-bound protein 2 (GRB2)

Justification for analogy
The motif in 1o17: compare to d2tpt_2 (same family); two strands are insertions; hybrid motif resulted from a helix-to-strand transition in a Rossmann structure. The motif in 1jyr: core motif in SH2 fold.

In the alignments below, two upper-case letters are aligned, while two lower-case letters are NOT aligned. The two sequences in an alignment are NOT continuous in most cases (see their ranges). The superpositions are re-constructed from the corresponding alignments by minimizing the overall RMSD. In a PDB-format superposition file, the first domain is represented by chain S and the second domain is represented by chain A.

MANUAL alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1o17_Dh   panakyqlMGVFSKdHLDLLSKSAYELDFNKIILVYGEPgidevspiGNTFMKIVSKRGIEEVKLNV--------kdehvaEFIKINTAVALFaldrvg-------
1jyr_Ac   ----gsmaWFFGKI-PRAKAEEMLSKQRHDGAFLIRESEs-----apGDFSLSVKFGNDVQHFKVLRdgagkyflwvvkfnSLNELVDYHRSTsvsrnqqiflrdi

DALI alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1o17_Dh   panakyqlMGVFSKDhLDLLSKSAYELDFNKIILVYGEpgidevspiGNTFMKIVSKRGIEEVKLNV-----kdehvaeFIKINTAVALFalDRVG------------
1jyr_Ac   ----gsmaWFFGKIP-RAKAEEMLSKQRHDGAFLIRES-----esapGDFSLSVKFGNDVQHFKVLRdgagkyflwvvkFNSLNELVDYH--RSTSvsrnqqiflrdi

TM alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1o17_Dh   ---PANAKYQLMGVFSKDHLDLLSKSAYELDFNKIILVYGEPG---IDEVSPIGNTFMKIVSKRGIEEVKLNV-------------KDEHVAEFIKINTAVALFALDRVG------------
1jyr_Ac   GSM-------AWFFGKIP-RAKAEEMLSKQRHDGAFLIRES-ESAP-------GDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKF------NS--LNELVDYH-R-STSVSRNQQIFLRDI

FAST alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1o17_Dh   PANAKYQLMGVF----------SKDHLDLLSKSAYELDFNKIILVYGEPGIDEVSPIG-----NTFMKIVSKRGIEEVKLNVKDEHVA---------------EFIKINTAVALFALDRVG-------------
1jyr_Ac   ------------GSMAWFFGKIPRAKAEEMLSKQ---RHDGAFLIRES----------ESAPGDFSLSVKFGNDVQHFKVL-------RDGAGKYFLWVVKFNSLNELVDYHRST------SVSRNQQIFLRDI