| Motif (click icon to enlarge) | SCOPid | Range | SCOP Class | SCOP Fold | SCOP Superfamily | SCOP Family | Protein |
|---|---|---|---|---|---|---|---|
1oi2_Ah |
d1oi2a_ | A20-A87 | Alpha and beta proteins (a/b) | DAK1/DegV-like | DAK1/DegV-like | DAK1 | Dihydroxyacetone kinase subunit K, DhaK |
1uw1_Aa |
d1uw1a_ | A7-A73 | Designed proteins | In vitro evolution products | In vitro evolution products | Function-directed selections | Artificial nucleotide binding protein (ANBP) |
Justification for analogy
1uw1 is an artificial protein and can be used as analog to natural proteins.
| Alignment-based scores | |||||
|---|---|---|---|---|---|
| Aligner | Aligned Length | Sequence Identity | RMSD | GDT-TS | COMPASS |
| manual | 35 | 0.08571 | 2.13118 | 70.71429 | -0.43761 |
| dali | 48 | 0.06250 | 3.44410 | 56.77083 | -0.59553 |
| tm | 21 | 0.04762 | 2.36766 | 67.85714 | -0.13455 |
| fast | 38 | 0.07895 | 3.14509 | 59.86842 | -0.58931 |
In the alignments below, two upper-case letters are aligned, while two lower-case letters are NOT aligned. The two sequences in an alignment are NOT continuous in most cases (see their ranges). The superpositions are re-constructed from the corresponding alignments by minimizing the overall RMSD. In a PDB-format superposition file, the first domain is represented by chain S and the second domain is represented by chain A.
MANUAL alignment PDB format superposition aligned motifs in PyMol whole structures in PyMol 1oi2_Ah -DVLDEQLAGLAKAHP-------SLTLHQD--PVYVTRAdapvagkvallsgggsghepmhcgyigqgmlSGACPGei--- 1uw1_Aa dDKKTNWLKRIYRVRPcvkckvaPRNWKVKnkHLRIYNMcktcfnnsidig--------------ddtyhGHDDWLmyads
DALI alignment PDB format superposition aligned motifs in PyMol whole structures in PyMol 1oi2_Ah -DVLDEQLAGLAKAHPS-------LTLHQD--pVYVTRA---DAPV-AGKVallsgggsghepmhcgyigQGMLSGACPGEI--- 1uw1_Aa dDKKTNWLKRIYRVRPCvkckvapRNWKVKnkhLRIYNMcktCFNNsIDIG------------------dDTYHGHDDWLMYads
TM alignment PDB format superposition aligned motifs in PyMol whole structures in PyMol 1oi2_Ah -------------------------D------------VLDEQLAGLAKAHPSLT-LHQDP--------VYVTRADAPVAGKVALLSGGGSGHEPMHCGYIGQGMLSGACPGEI 1uw1_Aa DDKKTNWLKRIYRVRPCVKCKVAPRNWKVKNKHLRIYN-MCKTCFNNSIDIG-DDTYHGHDDWLMYADS---------------------------------------------
FAST alignment PDB format superposition aligned motifs in PyMol whole structures in PyMol 1oi2_Ah -DVLDEQLAGLAKAHPS--------LTLHQD---PVYVTRADAPV----------AGKVALLSGGGSGHEPMHCGYIGQGMLS----GACPGEI--- 1uw1_Aa DDKKTNWLKRIYRVRP-CVKCKVAPRNWKV-KNKHLRIYN-----MCKTCFNNSIDIGDD-----------------------TYHGHDDWLMYADS