d1ps6a_d1f9za_

Motif (click icon to enlarge)	SCOPid	Range	SCOP Class	SCOP Fold	SCOP Superfamily	SCOP Family	Protein
1ps6_Ai	d1ps6a_	A112-A123,A133-A156,A280-A299	Alpha and beta proteins (a/b)	Isocitrate/Isopropylmalate dehydrogenase-like	Isocitrate/Isopropylmalate dehydrogenase-like	PdxA-like	4-hydroxythreonine-4-phosphate dehydrogenase PdxA
1f9z_Ac	d1f9za_	A1-A14,A15-A36,A37-A69	Alpha and beta proteins (a+b)	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase	Glyoxalase I (lactoylglutathione lyase)	Glyoxalase I (lactoylglutathione lyase)

Justification for analogy
In 1ps6, the motif occurs on the interface of the two duplicates. This is an interface motif.

In the alignments below, two upper-case letters are aligned, while two lower-case letters are NOT aligned. The two sequences in an alignment are NOT continuous in most cases (see their ranges). The superpositions are re-constructed from the corresponding alignments by minimizing the overall RMSD. In a PDB-format superposition file, the first domain is represented by chain S and the second domain is represented by chain A.

MANUAL alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1ps6_Ai   ---efAALITGPVHkftGHTEFFEERSQAKkvVMMLATERGVNITLg--------lPFIRTSVDHgt-----
1f9z_Ac   mrllhTMLRVGDLQ---RSIDFYTKVLGMKllRTSENPEYKYSLAFvgygpeteeaVIELTYNWGvdkyelg

DALI alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1ps6_Ai   ---efAALITGPvhkftGHTEFFEERSQAKKVVMMLATERGVNITLGL--------PFIRTSVDHGT-----
1f9z_Ac   mrllhTMLRVGD---lqRSIDFYTKVLGMKLLRTSENPEYKYSLAFVGygpeteeaVIELTYNWGVDkyelg

TM alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1ps6_Ai   ----EFAALITGP-VHKFTGHTEFFEE-RSQAKKV-VMMLATERGVNITLGL---------PFIRTSVDHGT-----
1f9z_Ac   MRLL-HTMLRVGDL----QRSIDFYTKVL-GM-KLLRTSENPEYKYSLAF-VGYGPETEEAVIELTYNWGVDKYELG

FAST alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1ps6_Ai   EF-----AALITGPVHKFTGH-TEFFEERSQAKKV---------VMMLATERGVNITLGLP-----------FIRTSVDHGT-------
1f9z_Ac   --MRLLHTMLRVG--------DLQRSIDFY-----TKVLGMKLLRTSENPEYKYSLAF---VGYGPETEEAVIELTYNWG--VDKYELG