| Motif (click icon to enlarge) | SCOPid | Range | SCOP Class | SCOP Fold | SCOP Superfamily | SCOP Family | Protein |
|---|---|---|---|---|---|---|---|
1slc_Ah |
d1slca_ | A24-A115 | All beta proteins | Concanavalin A-like lectins/glucanases | Concanavalin A-like lectins/glucanases | Galectin (animal S-lectin) | Galectin-1 |
1sq9_Ac |
d1sq9a_ | A286-A395 | All beta proteins | 7-bladed beta-propeller | WD40 repeat-like | WD40-repeat | Antiviral protein Ski8 (Ski8p) |
Justification for analogy
The motif in 1slc: it uses strands 3456789. Although it is not a hybrid motif because all these seven strands are present in other
homologs of this family, this structure appears to be Ig-like: switch the positions of the very first and very last strands, then the very
first strand is strand 1 in Ig fold, there are two strands inserted after strand 4 in Ig and two strands inserted after strand 5 in Ig.
The motif in 1sq9: uses core elements in the propeller.
| Alignment-based scores | |||||
|---|---|---|---|---|---|
| Aligner | Aligned Length | Sequence Identity | RMSD | GDT-TS | COMPASS |
| manual | 71 | 0.11268 | 5.14117 | 44.71831 | -21.46330 |
| dali | 65 | 0.10769 | 3.86295 | 54.61538 | -20.30139 |
| tm | 55 | 0.09091 | 3.22719 | 58.18182 | -15.79711 |
| fast | 49 | 0.06122 | 2.60704 | 61.73469 | -11.98223 |
In the alignments below, two upper-case letters are aligned, while two lower-case letters are NOT aligned. The two sequences in an alignment are NOT continuous in most cases (see their ranges). The superpositions are re-constructed from the corresponding alignments by minimizing the overall RMSD. In a PDB-format superposition file, the first domain is represented by chain S and the second domain is represented by chain A.
MANUAL alignment PDB format superposition aligned motifs in PyMol whole structures in PyMol 1slc_Ah -aaDAKSFL-LNLGK-DDNNLcLHFNPrfnahgdvnTIVCNSKD--AGAWGAEQRESAfpfqp-------------gSVVEV-CISFNQ------------TDLTIKLPDGYEFKFPNRLnle 1sq9_Ac gefAHSSWVmSLSFNdSGETL-CSAGW---------DGKLRFWDvkTKERITTLNMHCddieieedilavdehgdslAEPGVfDVKFLKkgwrsgmgadlnESLCCVCLDRSIRWFREAG---
DALI alignment PDB format superposition aligned motifs in PyMol whole structures in PyMol 1slc_Ah -aadaKSFL-LNLG-kdDNNLcLHFNPRfnahgdvntIVCNSKDA--GAWGAEQRESA---------fpfQPGS-----vveVCISFNQ------------TDLTIKLPDGYEFKFPNrlnle 1sq9_Ac gefahSSWVmSLSFndsGETL-CSAGWD---------GKLRFWDVktKERITTLNMHCddieieedilavDEHGdslaepgvFDVKFLKkgwrsgmgadlnESLCCVCLDRSIRWFRE---ag
TM alignment PDB format superposition aligned motifs in PyMol whole structures in PyMol 1slc_Ah --------------------------AADAKSFLLNLGK----DDNNLCLHFNPRFNAHGDVNTIVCNSKDAGAWGAEQRES-----AFPF-----QP--GSVVEVCISFN-Q-----------TDLTIKLP-DGYEFKFPNRLNLE 1sq9_Ac GEFAHSSWVMSLSFNDSGETLCSAGW-----DGKLRFWDVKTKER-IT--TLNMH-------CD----------------DIEIEEDILAVDEHGDSLAE--PGVFDVKFLKKGWRSGMGADLNESLCCVCLDR-SIRWFREAG---
FAST alignment PDB format superposition aligned motifs in PyMol whole structures in PyMol 1slc_Ah AADAKS----------FLLNLGKDDNNL-CLHFNPRFNAHGDVNTIVCNSKDAGAWGAE------QRESAFPFQPGSVV----------------------------EVCISFNQ----------TDLTIKLPD-----GYEFKFPNRLNLE- 1sq9_Ac ------GEFAHSSWVMSLSFNDS-----GETLCSAGW-----DGKLRFWDV--------KTKERITTLN----------MHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLK--KGWRSGMGADLNESLCCV-CLDRSIRWFREA------G