d1tv8a_d1nbwb_

Motif (click icon to enlarge)	SCOPid	Range	SCOP Class	SCOP Fold	SCOP Superfamily	SCOP Family	Protein
1tv8_Ah	d1tv8a_	A13-A67,A265-A314	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Radical SAM enzymes	MoCo biosynthesis proteins	Molybdenum cofactor biosynthesis protein A MoaA
1nbw_Bc	d1nbwb_	B5-B58,B59-B117	Alpha and beta proteins (a/b)	Anticodon-binding domain-like	B12-dependent dehydatase associated subunit	Glycerol dehydratase reactivase, beta subunit	Glycerol dehydratase reactivase, beta subunit

Justification for analogy
The motif in 1tv8: a hybrid motif in an opened TIM-barrel. 1nbw has basically a mini-Rossmann core.

In the alignments below, two upper-case letters are aligned, while two lower-case letters are NOT aligned. The two sequences in an alignment are NOT continuous in most cases (see their ranges). The superpositions are re-constructed from the corresponding alignments by minimizing the overall RMSD. In a PDB-format superposition file, the first domain is represented by chain S and the second domain is represented by chain A.

MANUAL alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1tv8_Ah   iRDLRLSVTdrcnfrcdycmpkevfgddfvflpknellTFDEMARIAKVYAELGV-------------------------TRARLSS----DGKFYgCLFAT--VDGFNvkafirsGVTDEELKEQFKALWQIRdd-------
1nbw_Bc   pPGVRLFYDpr-------------------------ghHAGAINELCWGLEEQGVpcqtitydgggdaaalgalaarsspLRVGIGLsasgEIALT-HAQLPadAPLATgh----vTDSDDQLRTLGANAGQLVkvlplsern

DALI alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1tv8_Ah   irDLRLSVTdrcnfrcdycmpkevfgddfvflpKNELlTFDEMARIAKVYAELGV-------------------------TRARLSSD----GKFYGCLF-ATVDGFNVKafIRSGVTD-eelkeqFKALWQI----rdd
1nbw_Bc   ppGVRLFYD------------------------PRGH-HAGAINELCWGLEEQGVpcqtitydgggdaaalgalaarsspLRVGIGLSasgeIALTHAQLpADAPLATGH--VTDSDDQlrtlganAGQLVKVlplsern

TM alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1tv8_Ah   -IRDLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGV-------------------------TRARLSSD----GKFYGCLFATVDG-FNVKAFIRSGVTDEELKEQFKALW---QIR----DD
1nbw_Bc   P-PGVRLFYD-P----------------------R--GHHAGAINELCWGLEEQGVPCQTITYDGGGDAAALGALAARSSPLRVGIGLSASGEIALTHAQLPADAPLATGHV-TD-SDDQLRTLGANAGQLVKVLPLSERN--

FAST alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1tv8_Ah   IR----DLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLT----FDEMARIAKVYAELGVT-----------------------------RARLSSDGKFYG-CLFATVDGFNVKAFIRSG------------VTDEELKEQFKALWQIRDD----------
1nbw_Bc   --PPGVRLFYDP-------------------------------RGHHAGAINELCWGLEEQG--VPCQTITYDGGGDAAALGALAARSSPLRVGIGLSASGEIALTHAQL--------------PADAPLATGHVTDSDDQLRTLGANAGQL---VKVLPLSERN