d1tv8a_d1nbwb_

Motif
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SCOPidRangeSCOP ClassSCOP FoldSCOP SuperfamilySCOP FamilyProtein
1tv8_Ah
d1tv8a_A13-A67,A265-A314Alpha and beta proteins (a/b)TIM beta/alpha-barrelRadical SAM enzymesMoCo biosynthesis proteinsMolybdenum cofactor biosynthesis protein A MoaA
1nbw_Bc
d1nbwb_B5-B58,B59-B117Alpha and beta proteins (a/b)Anticodon-binding domain-likeB12-dependent dehydatase associated subunitGlycerol dehydratase reactivase, beta subunitGlycerol dehydratase reactivase, beta subunit

Justification for analogy
The motif in 1tv8: a hybrid motif in an opened TIM-barrel. 1nbw has basically a mini-Rossmann core.


Alignment-based scores
AlignerAligned LengthSequence IdentityRMSDGDT-TSCOMPASS
manual650.138463.0593756.15385-2.99959
dali670.119403.3319658.58209-3.10181
tm750.080003.7070355.66667-4.48385
fast530.169813.7739945.75472-2.63268

In the alignments below, two upper-case letters are aligned, while two lower-case letters are NOT aligned. The two sequences in an alignment are NOT continuous in most cases (see their ranges). The superpositions are re-constructed from the corresponding alignments by minimizing the overall RMSD. In a PDB-format superposition file, the first domain is represented by chain S and the second domain is represented by chain A.

MANUAL alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1tv8_Ah   iRDLRLSVTdrcnfrcdycmpkevfgddfvflpknellTFDEMARIAKVYAELGV-------------------------TRARLSS----DGKFYgCLFAT--VDGFNvkafirsGVTDEELKEQFKALWQIRdd-------
1nbw_Bc   pPGVRLFYDpr-------------------------ghHAGAINELCWGLEEQGVpcqtitydgggdaaalgalaarsspLRVGIGLsasgEIALT-HAQLPadAPLATgh----vTDSDDQLRTLGANAGQLVkvlplsern

DALI alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1tv8_Ah   irDLRLSVTdrcnfrcdycmpkevfgddfvflpKNELlTFDEMARIAKVYAELGV-------------------------TRARLSSD----GKFYGCLF-ATVDGFNVKafIRSGVTD-eelkeqFKALWQI----rdd
1nbw_Bc   ppGVRLFYD------------------------PRGH-HAGAINELCWGLEEQGVpcqtitydgggdaaalgalaarsspLRVGIGLSasgeIALTHAQLpADAPLATGH--VTDSDDQlrtlganAGQLVKVlplsern

TM alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1tv8_Ah   -IRDLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGV-------------------------TRARLSSD----GKFYGCLFATVDG-FNVKAFIRSGVTDEELKEQFKALW---QIR----DD
1nbw_Bc   P-PGVRLFYD-P----------------------R--GHHAGAINELCWGLEEQGVPCQTITYDGGGDAAALGALAARSSPLRVGIGLSASGEIALTHAQLPADAPLATGHV-TD-SDDQLRTLGANAGQLVKVLPLSERN--

FAST alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1tv8_Ah   IR----DLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLT----FDEMARIAKVYAELGVT-----------------------------RARLSSDGKFYG-CLFATVDGFNVKAFIRSG------------VTDEELKEQFKALWQIRDD----------
1nbw_Bc   --PPGVRLFYDP-------------------------------RGHHAGAINELCWGLEEQG--VPCQTITYDGGGDAAALGALAARSSPLRVGIGLSASGEIALTHAQL--------------PADAPLATGHVTDSDDQLRTLGANAGQL---VKVLPLSERN