d1uoua1d1fs1b1

Motif
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SCOPidRangeSCOP ClassSCOP FoldSCOP SuperfamilySCOP FamilyProtein
1uou_Ah
d1uoua1A65-A104,A187-A227All alpha proteinsMethionine synthase domain-likeNucleoside phosphorylase/phosphoribosyltransferase N-terminal domainNucleoside phosphorylase/phosphoribosyltransferase N-terminal domainThymidine phosphorylase
1fs1_Bc
d1fs1b1B43-B95,B96-B140All alpha proteinsSkp1 dimerisation domain-likeSkp1 dimerisation domain-likeSkp1 dimerisation domain-likeCyclin A/CDK2-associated p45, Skp1

Justification for analogy
The motif in 1uou: it uses two helices in the N-terminal all-alpha domain, one insertion helix in the Rossmann-like domain, and the crossover helix of the Rossmann domain. So it is a hybrid motif.


Alignment-based scores
AlignerAligned LengthSequence IdentityRMSDGDT-TSCOMPASS
manual580.068973.2030152.15517-13.26296
dali580.086212.5101059.91379-11.06781
tm610.098362.9844159.83607-12.46652
fast530.094342.7229658.49057-8.82788

In the alignments below, two upper-case letters are aligned, while two lower-case letters are NOT aligned. The two sequences in an alignment are NOT continuous in most cases (see their ranges). The superpositions are re-constructed from the corresponding alignments by minimizing the overall RMSD. In a PDB-format superposition file, the first domain is represented by chain S and the second domain is represented by chain A.

MANUAL alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1uou_Ah   --------saQGAQIGAMLMAIRLRGmdleeTSVLTQALAQsgqqlewqseqlVPADGILYAARDVTAtvdSLPLITASILSKKLVEGl-----------
1fs1_Bc   dpvplpnvnaAILKKVIQWCTHHKDD-----PVWDQEFLKV-----------dQGTLFELILAANYLD---IKGLLDVTCKTVANMIKgktpeeirktfn

DALI alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1uou_Ah   -----saqGAQIGAMLMAIRLRG-mdLEETSVLTQAlaqsgqqlewqseqlVPADGILYAARDVTaTVDSlpLITASILSKKLVEGL-----------
1fs1_Bc   dpvplpnvNAAILKKVIQWCTHHkddPVWDQEFLKV--------------dQGTLFELILAANYL-DIKG--LLDVTCKTVANMIKGktpeeirktfn

TM alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1uou_Ah   -------SAQGAQIGAMLMAIRLRGM-DLEETSVLTQALAQSGQQLEWQSEQLVPADGILYAARDVTATVDSLPL-ITASILSKKLVEGL-----------
1fs1_Bc   DPVPLPN--VNAAILKKVIQWCTHHKDDPVWDQEFL-KV--D-----------QGTLFELILAANYLD-IKG--LLDV-TCKTVANMIKGKTPEEIRKTFN

FAST alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1uou_Ah   SAQG---------AQIGAMLMAIRLRGMD----LEETSVLTQALAQSGQQLEWQSEQLV--PADGILYAARDVTATVDSLPLITASILSKKLVEGL-------------
1fs1_Bc   ----DPVPLPNVNAAILKKVIQWCTH---HKDDPVWDQEFLKV----------------DQGTLFELILAANYLD---IKGLLDVTCKTVANMI--KGKTPEEIRKTFN