| Motif (click icon to enlarge) | SCOPid | Range | SCOP Class | SCOP Fold | SCOP Superfamily | SCOP Family | Protein |
|---|---|---|---|---|---|---|---|
1uyr_Ah |
d1uyra1 | A1529-A1628,A1795-A1817 | Alpha and beta proteins (a/b) | ClpP/crotonase | ClpP/crotonase | Biotin dependent carboxylase carboxyltransferase domain | Acetyl-coenzyme A carboxylase |
1vkk_Ac |
d1vkka_ | A6-A127,A128-A142 | Alpha and beta proteins (a+b) | Gelsolin-like | Actin depolymerizing proteins | Cofilin-like | Glia maturation factor gamma, GMF-gamma |
Justification for analogy
Compare 1uyr and d1tyfa_ (different SCOP family, same superfamily), A N-terminal beta-hairpin is insertion. So the motif in 1uyr is a hybrid.
| Alignment-based scores | |||||
|---|---|---|---|---|---|
| Aligner | Aligned Length | Sequence Identity | RMSD | GDT-TS | COMPASS |
| manual | 85 | 0.04706 | 2.62800 | 65.58824 | -23.34538 |
| dali | 95 | 0.04211 | 3.38919 | 58.68421 | -21.74605 |
| tm | 97 | 0.04124 | 3.42621 | 59.02062 | -23.03565 |
| fast | 86 | 0.04651 | 3.04389 | 61.91860 | -23.41582 |
In the alignments below, two upper-case letters are aligned, while two lower-case letters are NOT aligned. The two sequences in an alignment are NOT continuous in most cases (see their ranges). The superpositions are re-constructed from the corresponding alignments by minimizing the overall RMSD. In a PDB-format superposition file, the first domain is represented by chain S and the second domain is represented by chain A.
MANUAL alignment PDB format superposition aligned motifs in PyMol whole structures in PyMol 1uyr_Ah ---------------dvkltddFFISNELIEDE-NGELTEVerep---------ganaiGMVAFKITVKTPey---pRGRQFVVVANDITFKigsfGPQEDEFFNKVTEYARKRGI-PRIYLAAnsgar-dDLAGVEKIVEWMSyvpakrnmp 1vkk_Ac vvcevdpelketlrkfrfrketNNAAIIMKVDKdRQMVVLEdelqnispeelklelperQPRFVVYSYKYVhddgrvSYPLCFIFSSPVGCK----PEQQMMYAGSKNRLVQTAELtKVFEIRTtd---dlTETWLKEKLAFFR---------
DALI alignment PDB format superposition aligned motifs in PyMol whole structures in PyMol 1uyr_Ah ---------------dvklTDDFFISNELIED-ENGELTEVE---------rePGANaiGMVAFKITVKTPE---yPRGRQFVVVANDItfkiGSFGPQEDEFFNKVTEYARKRGI-PRIYLAAnsgardDLAGVEKIVEWMSyvpakrnmp 1vkk_Ac vvcevdpelketlrkfrfrKETNNAAIIMKVDkDRQMVVLEDelqnispeelkLELPerQPRFVVYSYKYVHddgrVSYPLCFIFSSPV----GCKPEQQMMYAGSKNRLVQTAELtKVFEIRT--tddlTETWLKEKLAFFR---------
TM alignment PDB format superposition aligned motifs in PyMol whole structures in PyMol 1uyr_Ah --------------------DVKLTDDFFISNELIED-ENGELTEVER----------EPGANAIGMVAFKITVKT------PEYPRGRQFVVVANDITFKIGSFGPQEDEFFNKVTEYARKRGI-PRIYLAAN--SGARDDLAGVEKIVEWMSYVPAKRNMP 1vkk_Ac VVCEVDPELKETLRKFRFRK-----ETNNAAIIMKVDKDRQMVVLEDELQNISPEELKLEL-PERQPRFVVYSYKYVHDDGRVS---YPLCFIFSSPV----GCKPEQQMMYAGSKNRLVQTAELTKVFEIRTTDD----LTETWLKEKLAFF-R--------
FAST alignment PDB format superposition aligned motifs in PyMol whole structures in PyMol 1uyr_Ah DVKLTDD----------------------FFISNELIED-ENGELTEVERE-----------PGANAIG----MVAFKITVKTPEYP------RGRQFVVVANDITFKIGSFGPQEDEFFNKVTEYARKRGI-PRIYLAANSGARDD------LAGVEKIVEWMSYVPAKRNMP 1vkk_Ac -------VVCEVDPELKETLRKFRFRKETNNAAIIMKVDKDRQMVVLE---DELQNISPEELKLEL---PERQPRFVVYSYKYV---HDDGRVSYPLCFIFSSPVGCK----PEQQMMYAGSKNRLVQTAELTKVFEIR--------TTDDLTETWLKEKLAFFR---------