d1uyrb1d1a79a1

Motif (click icon to enlarge)	SCOPid	Range	SCOP Class	SCOP Fold	SCOP Superfamily	SCOP Family	Protein
1uyr_Bh	d1uyrb1	B1484-B1628	Alpha and beta proteins (a/b)	ClpP/crotonase	ClpP/crotonase	Biotin dependent carboxylase carboxyltransferase domain	Acetyl-coenzyme A carboxylase
1a79_Ac	d1a79a1	A83-A179	Alpha and beta proteins (a/b)	Restriction endonuclease-like	tRNA-intron endonuclease catalytic domain-like	tRNA-intron endonuclease catalytic domain-like	Tetrameric tRNA splicing endonuclease, C-terminal domain

Justification for analogy
Compare 1uyr and d1tyfa_ (different SCOP family, same superfamily), A N-terminal beta-hairpin is insertion. So the motif in 1uyr is a hybrid. The motif in 1a79 uses core elements from the endonuclease fold.

In the alignments below, two upper-case letters are aligned, while two lower-case letters are NOT aligned. The two sequences in an alignment are NOT continuous in most cases (see their ranges). The superpositions are re-constructed from the corresponding alignments by minimizing the overall RMSD. In a PDB-format superposition file, the first domain is represented by chain S and the second domain is represented by chain A.

MANUAL alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1uyr_Bh   atpypvkewlqpkrykahlmgttYVYDFPELFRQASssqwknfsadvkltddfFISNELIedengelteverepganaigmvAFKITVKtpeypRGRQ-FVVVANDITFkigSFGpqeDEFFNKVTEYARKRGIPRIYLAANSgar-----------
1a79_Ac   -------------------erlcLKYLVYKDLRTRG-----------------YIVKTGLk------------------ygaDFRLYERganidKEHSvYLVKVFPEDS---SFL---LSELTGFVRVAHSVRKKLLIAIVDAdgdivyynmtyvkp

DALI alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1uyr_Bh   atpypvkewlqpkrykahlmGTTYVYD-FPELFRQASssqwknfsadvkltddfFISNELiedengelteverepganaigmvAFKITVKTPEYPRGR-QFVVVANDItfkIGSFGpqeDEFFNKVTEYARKRGIPRIYLAAN-----------sgar
1a79_Ac   --------------------ERLCLKYlVYKDLRTRG----------------yIVKTGL-------------------kygaDFRLYERGANIDKEHsVYLVKVFPE---DSSFL---LSELTGFVRVAHSVRKKLLIAIVDadgdivyynmtyvkp

TM alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1uyr_Bh   ATPYPVKEWLQPKRYKAHLMGTTYVYD-FPELFRQASSSQWKNFSADVKLTDDFFISNELIEDENGELTEVEREPGANAIGMVAFKITVKTPEYPR---G-RQFVVVANDITFKIGSFGPQEDEFFNKVTEYARKRGIPRIYLAAN---------------SGAR
1a79_Ac   --------ER--L----------CLKYLVYKDLRTRGY----------------IVKTGL--------KYG------------ADFRLYERG--ANIDKEHSVYLVKVFPE---DSSF-L--LSELTGFVRVAHSVRKKLLIAIVDADGDIVYYNMTYVKP----

FAST alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1uyr_Bh   ATPYPVKEWLQPKRYKAHLMGTTY-VYDFPELFRQASSSQWKNFSADVKLTDDF-FISNELIEDENGELTEVEREPGANAIGMVA-----FKITVKTPEYP------RGRQ-FVVVANDITFKIGSFGPQE---DEFFNKVTEYARKRGIPRIYLAANSGAR-----------------
1a79_Ac   ------------------------ERLCLKYLVYKDLRTR--------------GYIVKTGL-----------------------KYGADFRLYE------RGANIDKEHSVYLVKVFPEDS---------SFLLSELTGFVRVAHSVRKKLLIAI------VDADGDIVYYNMTYVKP