d6mhta_d1vm0b_

Motif (click icon to enlarge)	SCOPid	Range	SCOP Class	SCOP Fold	SCOP Superfamily	SCOP Family	Protein
6mht_Ah	d6mhta_	A71-A176	Alpha and beta proteins (a/b)	S-adenosyl-L-methionine-dependent methyltransferases	S-adenosyl-L-methionine-dependent methyltransferases	C5 cytosine-specific DNA methylase, DCM	DNA methylase HhaI
1vm0_Bc	d1vm0b_	B20-B122	Alpha and beta proteins (a+b)	IF3-like	AlbA-like	Hypothetical protein At2g34160	Hypothetical protein At2g34160

Justification for analogy
The motif in 6mht: methyltransferase is homologous to Rossmann-like proteins, so the anti-parallel strand is an insertion. So the motif is analogous to IF3-like.

In the alignments below, two upper-case letters are aligned, while two lower-case letters are NOT aligned. The two sequences in an alignment are NOT continuous in most cases (see their ranges). The superpositions are re-constructed from the corresponding alignments by minimizing the overall RMSD. In a PDB-format superposition file, the first domain is represented by chain S and the second domain is represented by chain A.

MANUAL alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

6mht_Ah   dhdiLCAGFPcqafsisgkqkgfedsrgtLFFDIARIVREKK--PKVVFMENVKNFAshdngNTLEVVKNTMNELD-YSF-HAKVLNALdyg----ipqKRERIYMICFRNDln------------
1vm0_Bc   ---kNRIQVSnt---------------kkPLFFYVNLAKRYMqqYNDVELSALGMAI-----ATVVTVTEILKNNGfAVEkKIMTSIVDikddargrpvQKAKIEITLVKSEkfdelmaaaneeke

DALI alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

6mht_Ah   dhdILCAGFPCQafsisgkqkgfedSRGT-LFFDIARIVreKKPKVVFMENVKNFAshdngnTLEVVKNTMNE-LDYSF-HAKVLNAL----dygiPQKRERIYMICFRND------------ln
1vm0_Bc   ---KNRIQVSNT-------------KKPLfFYVNLAKRY-mQQYNDVELSALGMAI-----aTVVTVTEILKNnGFAVEkKIMTSIVDikddargrPVQKAKIEITLVKSEkfdelmaaaneeke

TM alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

6mht_Ah   DHDILCAGFPCQAFSISGKQKGFEDSRGT--LFFDIARIVREKKPKVVFMENVKNFASHDNGNTLEVVKNTMN--ELDYSF-HAKVLNAL-------DYGIPQ-KRERIYMICFRND--------------LN
1vm0_Bc   ---KNRIQV-SNT-------------KKPLFFYVNLAKRYMQQ-YNDVELSALGMAIAT----VV-TVTEILKNNGF-AVEKKIMTSIVDIKDDARG----RPVQKAKIEITLVKSEKFDELMAAANEEKE--

FAST alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

6mht_Ah   DHDI-LCAGFPCQAFSISGKQKGFEDSRGTL------FFDIARIVREKK---PKVVFMENVKNFASHDNGNTLEVVKNTMNELD-YSF-HAKVLNALDYGIP---------QKRERIYMICFRNDLN--------------
1vm0_Bc   ----KNRIQV---------------------SNTKKPLFFYVNLAKRY-MQQYNDVELSALGMAI-----ATVVTVTEILKNNGFAVEKKIMTSIVD-----IKDDARGRPVQKAKIEITLVKSE--KFDELMAAANEEKE