1gx5_A

PDB Headers (abridged)

HEADER    TRANSFERASE                             27-MAR-02   1GX5              
TITLE     HEPATITIS C VIRUS RNA POLYMERASE IN COMPLEX WITH GTP AND              
TITLE    2 MANGANESE                                                            
COMPND   2 MOLECULE: RNA-DIRECTED RNA POLYMERASE;                               
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    S.BRESSANELLI,F.A.REY

Sequence

> 1gx5_A (A:) RNA-DIRECTED RNA POLYMERASE
SMSYTWTGALITPCAAEESKLPINALSNSLLRHHNMVYATTSRSAGLRQKKVTFDRLQVL
DDHYRDVLKEMKAKASTVKAKLLSVEEACKLTPPHSAKSKFGYGAKDVRNLSSKAVNHIH
SVWKDLLEDTVTPIDTTIMAKNEVFCVQPEKGGRKPARLIVFPDLGVRVCEKMALYDVVS
TLPQVVMGSSYGFQYSPGQRVEFLVNTWKSKKNPMGFSYDTRCFDSTVTENDIRVEESIY
QCCDLAPEARQAIKSLTERLYIGGPLTNSKGQNCGYRRCRASGVLTTSCGNTLTCYLKAS
AACRAAKLQDCTMLVNGDDLVVICESAGTQEDAASLRVFTEAMTRYSAPPGDPPQPEYDL
ELITSCSSNVSVAHDASGKRVYYLTRDPTTPLARAAWETARHTPVNSWLGNIIMYAPTLW
ARMILMTHFFSILLAQEQLEKALDCQIYGACYSIEPLDLPQIIERLHGLSAFSLHSYSPG
EINRVASCLRKLGVPPLRVWRHRARSVRARLLSQGGRAATCGKYLFNWAV

Coordinates

Link to SCOP

Link to Pfam

Link to Protein Data Bank

Structural Domains (with extensions added by structural compactness)

1gx5_A_str_1 (A: 1-182)

Sequence

> 1gx5_A_str_1 (A: 1-182) RNA-DIRECTED RNA POLYMERASE
SMSYTWTGALITPCAAEESKLPINALSNSLLRHHNMVYATTSRSAGLRQKKVTFDRLQVL
DDHYRDVLKEMKAKASTVKAKLLSVEEACKLTPPHSAKSKFGYGAKDVRNLSSKAVNHIH
SVWKDLLEDTVTPIDTTIMAKNEVFCVQPEKGGRKPARLIVFPDLGVRVCEKMALYDVVS
TL

Coordinates

1gx5_A_str_2 (A: 183-224, 292-370)

Sequence

> 1gx5_A_str_2 (A: 183-224, 292-370) RNA-DIRECTED RNA POLYMERASE
PQVVMGSSYGFQYSPGQRVEFLVNTWKSKKNPMGFSYDTRCFTLTCYLKASAACRAAKLQ
DCTMLVNGDDLVVICESAGTQEDAASLRVFTEAMTRYSAPPGDPPQPEYDLELITSCSSN
V

Coordinates

1gx5_A_str_3 (A: 225-291)

Sequence

> 1gx5_A_str_3 (A: 225-291) RNA-DIRECTED RNA POLYMERASE
DSTVTENDIRVEESIYQCCDLAPEARQAIKSLTERLYIGGPLTNSKGQNCGYRRCRASGV
LTTSCGN

Coordinates

1gx5_A_str_4 (A: 371-530)

Sequence

> 1gx5_A_str_4 (A: 371-530) RNA-DIRECTED RNA POLYMERASE
SVAHDASGKRVYYLTRDPTTPLARAAWETARHTPVNSWLGNIIMYAPTLWARMILMTHFF
SILLAQEQLEKALDCQIYGACYSIEPLDLPQIIERLHGLSAFSLHSYSPGEINRVASCLR
KLGVPPLRVWRHRARSVRARLLSQGGRAATCGKYLFNWAV

Coordinates

Structural Domains (with extensions added by sequence continuity)

1gx5_A_seq_1 (A: 1-182)

Sequence

> 1gx5_A_seq_1 (A: 1-182) RNA-DIRECTED RNA POLYMERASE
SMSYTWTGALITPCAAEESKLPINALSNSLLRHHNMVYATTSRSAGLRQKKVTFDRLQVL
DDHYRDVLKEMKAKASTVKAKLLSVEEACKLTPPHSAKSKFGYGAKDVRNLSSKAVNHIH
SVWKDLLEDTVTPIDTTIMAKNEVFCVQPEKGGRKPARLIVFPDLGVRVCEKMALYDVVS
TL

Coordinates

1gx5_A_seq_2 (A: 183-224, 292-370)

Sequence

> 1gx5_A_seq_2 (A: 183-224, 292-370) RNA-DIRECTED RNA POLYMERASE
PQVVMGSSYGFQYSPGQRVEFLVNTWKSKKNPMGFSYDTRCFTLTCYLKASAACRAAKLQ
DCTMLVNGDDLVVICESAGTQEDAASLRVFTEAMTRYSAPPGDPPQPEYDLELITSCSSN
V

Coordinates

1gx5_A_seq_3 (A: 225-291)

Sequence

> 1gx5_A_seq_3 (A: 225-291) RNA-DIRECTED RNA POLYMERASE
DSTVTENDIRVEESIYQCCDLAPEARQAIKSLTERLYIGGPLTNSKGQNCGYRRCRASGV
LTTSCGN

Coordinates

1gx5_A_seq_4 (A: 371-530)

Sequence

> 1gx5_A_seq_4 (A: 371-530) RNA-DIRECTED RNA POLYMERASE
SVAHDASGKRVYYLTRDPTTPLARAAWETARHTPVNSWLGNIIMYAPTLWARMILMTHFF
SILLAQEQLEKALDCQIYGACYSIEPLDLPQIIERLHGLSAFSLHSYSPGEINRVASCLR
KLGVPPLRVWRHRARSVRARLLSQGGRAATCGKYLFNWAV

Coordinates

Extensions (N/C terminal extensions and linkers)

1gx5_A_ext_1 (A: 17-40)

Sequence

> 1gx5_A_ext_1 (A: 17-40) RNA-DIRECTED RNA POLYMERASE
EESKLPINALSNSLLRHHNMVYAT

Coordinates

1gx5_A_ext_2 (A: 142-157)

Sequence

> 1gx5_A_ext_2 (A: 142-157) RNA-DIRECTED RNA POLYMERASE
NEVFCVQPEKGGRKPA

Coordinates

Composite domains

1gx5_A_cm_1 (A: 1-16, 41-141, 158-182, 225-291)

Sequence

> 1gx5_A_cm_1 (A: 1-16, 41-141, 158-182, 225-291) RNA-DIRECTED RNA POLYMERASE
SMSYTWTGALITPCAATSRSAGLRQKKVTFDRLQVLDDHYRDVLKEMKAKASTVKAKLLS
VEEACKLTPPHSAKSKFGYGAKDVRNLSSKAVNHIHSVWKDLLEDTVTPIDTTIMAKRLI
VFPDLGVRVCEKMALYDVVSTLDSTVTENDIRVEESIYQCCDLAPEARQAIKSLTERLYI
GGPLTNSKGQNCGYRRCRASGVLTTSCGN

Coordinates

1gx5_A_cm_2 (A: 17-37, 371-530)

Sequence

> 1gx5_A_cm_2 (A: 17-37, 371-530) RNA-DIRECTED RNA POLYMERASE
EESKLPINALSNSLLRHHNMVSVAHDASGKRVYYLTRDPTTPLARAAWETARHTPVNSWL
GNIIMYAPTLWARMILMTHFFSILLAQEQLEKALDCQIYGACYSIEPLDLPQIIERLHGL
SAFSLHSYSPGEINRVASCLRKLGVPPLRVWRHRARSVRARLLSQGGRAATCGKYLFNWA
V

Coordinates

1gx5_A_cm_3 (A: 38-40, 142-157)

Sequence

> 1gx5_A_cm_3 (A: 38-40, 142-157) RNA-DIRECTED RNA POLYMERASE
YATNEVFCVQPEKGGRKPA

Coordinates