1hhs_A

PDB Headers (abridged)

HEADER    RNA POLYMERASE                          28-DEC-00   1HHS              
TITLE     RNA DEPENDENT RNA POLYMERASE FROM DSRNA BACTERIOPHAGE PHI6            
COMPND   2 MOLECULE: P2 PROTEIN;                                                
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    J.M.GRIMES,S.J.BUTCHER,E.V.MAKEYEV,D.H.BAMFORD,D.I.STUART

Sequence

> 1hhs_A (A:) P2 PROTEIN
PRRAPAFPLSDIKAQMLFANNIKAQQASKRSFKEGAIETYEGLLSVDPRFLSFKNELSRY
LTDHFPANVDEYGRVYGNGVRTNFFGMRHMNGFPMIPATWPLASNLKKRADADLADGPVS
ERDNLLFRAAVRLMFSDLEPVPLKIRKGSSTCIPYFSNDMGTKIEIAERALEKAEEAGNL
MLQGKFDDAYQLHQMGGAYYVVYRAQSTDAITLDPKTGKFVSKDRMVADFEYAVTGGEQG
SLFAASKDASRLKEQYGIDVPDGFFCERRRTAMGGPFALNAPIMAVAQPVRNKIYSKYAY
TFHHTTRLNKEEKVKEWSLCVATDVSDHDTFWPGWLRDLICDELLNMGYAPWWVKLFETS
LKLPVYVGAPAPEQGHTLLGDPSNPDLEVGLSSGQGATDLMGTLLMSITYLVMQLDHTAP
HLNSRIKDMPSACRFLDSYWQGHEEIRQISKSDDAMLGWTKGRALVGGHRLFEMLKEGKV
NPSPYMKISYEHGGAFLGDILLYDSRREPGSAIFVGNINSMLNNQFSPEYGVQSGVRDRS
KRKRPFPGLAWASMKDTYGACPIYSDVLEAIERCWWNAFGESYRAYREDMLKRDTLELSR
YVASMARQAGLAELTPIDLEVLADPNKLQYKWTEADVSANIHEVLMHGVSVEKTERFLRS
VMPR

Coordinates

Link to SCOP

Link to Pfam

Link to Protein Data Bank

Structural Domains (with extensions added by structural compactness)

1hhs_A_str_1 (A: 1-204, 270-293, 626-664)

Sequence

> 1hhs_A_str_1 (A: 1-204, 270-293, 626-664) P2 PROTEIN
PRRAPAFPLSDIKAQMLFANNIKAQQASKRSFKEGAIETYEGLLSVDPRFLSFKNELSRY
LTDHFPANVDEYGRVYGNGVRTNFFGMRHMNGFPMIPATWPLASNLKKRADADLADGPVS
ERDNLLFRAAVRLMFSDLEPVPLKIRKGSSTCIPYFSNDMGTKIEIAERALEKAEEAGNL
MLQGKFDDAYQLHQMGGAYYVVYRRTAMGGPFALNAPIMAVAQPVRNKNKLQYKWTEADV
SANIHEVLMHGVSVEKTERFLRSVMPR

Coordinates

1hhs_A_str_2 (A: 205-269)

Sequence

> 1hhs_A_str_2 (A: 205-269) P2 PROTEIN
AQSTDAITLDPKTGKFVSKDRMVADFEYAVTGGEQGSLFAASKDASRLKEQYGIDVPDGF
FCERR

Coordinates

1hhs_A_str_3 (A: 294-328, 403-501)

Sequence

> 1hhs_A_str_3 (A: 294-328, 403-501) P2 PROTEIN
IYSKYAYTFHHTTRLNKEEKVKEWSLCVATDVSDHTLLMSITYLVMQLDHTAPHLNSRIK
DMPSACRFLDSYWQGHEEIRQISKSDDAMLGWTKGRALVGGHRLFEMLKEGKVNPSPYMK
ISYEHGGAFLGDIL

Coordinates

1hhs_A_str_4 (A: 329-402)

Sequence

> 1hhs_A_str_4 (A: 329-402) P2 PROTEIN
DTFWPGWLRDLICDELLNMGYAPWWVKLFETSLKLPVYVGAPAPEQGHTLLGDPSNPDLE
VGLSSGQGATDLMG

Coordinates

1hhs_A_str_5 (A: 502-625)

Sequence

> 1hhs_A_str_5 (A: 502-625) P2 PROTEIN
LYDSRREPGSAIFVGNINSMLNNQFSPEYGVQSGVRDRSKRKRPFPGLAWASMKDTYGAC
PIYSDVLEAIERCWWNAFGESYRAYREDMLKRDTLELSRYVASMARQAGLAELTPIDLEV
LADP

Coordinates

Structural Domains (with extensions added by sequence continuity)

1hhs_A_seq_1 (A: 1-204, 270-293, 626-664)

Sequence

> 1hhs_A_seq_1 (A: 1-204, 270-293, 626-664) P2 PROTEIN
PRRAPAFPLSDIKAQMLFANNIKAQQASKRSFKEGAIETYEGLLSVDPRFLSFKNELSRY
LTDHFPANVDEYGRVYGNGVRTNFFGMRHMNGFPMIPATWPLASNLKKRADADLADGPVS
ERDNLLFRAAVRLMFSDLEPVPLKIRKGSSTCIPYFSNDMGTKIEIAERALEKAEEAGNL
MLQGKFDDAYQLHQMGGAYYVVYRRTAMGGPFALNAPIMAVAQPVRNKNKLQYKWTEADV
SANIHEVLMHGVSVEKTERFLRSVMPR

Coordinates

1hhs_A_seq_2 (A: 205-269)

Sequence

> 1hhs_A_seq_2 (A: 205-269) P2 PROTEIN
AQSTDAITLDPKTGKFVSKDRMVADFEYAVTGGEQGSLFAASKDASRLKEQYGIDVPDGF
FCERR

Coordinates

1hhs_A_seq_3 (A: 294-328, 403-501)

Sequence

> 1hhs_A_seq_3 (A: 294-328, 403-501) P2 PROTEIN
IYSKYAYTFHHTTRLNKEEKVKEWSLCVATDVSDHTLLMSITYLVMQLDHTAPHLNSRIK
DMPSACRFLDSYWQGHEEIRQISKSDDAMLGWTKGRALVGGHRLFEMLKEGKVNPSPYMK
ISYEHGGAFLGDIL

Coordinates

1hhs_A_seq_4 (A: 329-402)

Sequence

> 1hhs_A_seq_4 (A: 329-402) P2 PROTEIN
DTFWPGWLRDLICDELLNMGYAPWWVKLFETSLKLPVYVGAPAPEQGHTLLGDPSNPDLE
VGLSSGQGATDLMG

Coordinates

1hhs_A_seq_5 (A: 502-625)

Sequence

> 1hhs_A_seq_5 (A: 502-625) P2 PROTEIN
LYDSRREPGSAIFVGNINSMLNNQFSPEYGVQSGVRDRSKRKRPFPGLAWASMKDTYGAC
PIYSDVLEAIERCWWNAFGESYRAYREDMLKRDTLELSRYVASMARQAGLAELTPIDLEV
LADP

Coordinates

Extensions (N/C terminal extensions and linkers)

1hhs_A_ext_1 (A: 34-94)

Sequence

> 1hhs_A_ext_1 (A: 34-94) P2 PROTEIN
EGAIETYEGLLSVDPRFLSFKNELSRYLTDHFPANVDEYGRVYGNGVRTNFFGMRHMNGF
P

Coordinates

1hhs_A_ext_2 (A: 223-247)

Sequence

> 1hhs_A_ext_2 (A: 223-247) P2 PROTEIN
KDRMVADFEYAVTGGEQGSLFAASK

Coordinates

Composite domains

1hhs_A_cm_1 (A: 1-33, 95-204, 223-247, 270-293, 329-402, 626-664)

Sequence

> 1hhs_A_cm_1 (A: 1-33, 95-204, 223-247, 270-293, 329-402, 626-664) P2 PROTEIN
PRRAPAFPLSDIKAQMLFANNIKAQQASKRSFKMIPATWPLASNLKKRADADLADGPVSE
RDNLLFRAAVRLMFSDLEPVPLKIRKGSSTCIPYFSNDMGTKIEIAERALEKAEEAGNLM
LQGKFDDAYQLHQMGGAYYVVYRKDRMVADFEYAVTGGEQGSLFAASKRTAMGGPFALNA
PIMAVAQPVRNKDTFWPGWLRDLICDELLNMGYAPWWVKLFETSLKLPVYVGAPAPEQGH
TLLGDPSNPDLEVGLSSGQGATDLMGNKLQYKWTEADVSANIHEVLMHGVSVEKTERFLR
SVMPR

Coordinates

1hhs_A_cm_2 (A: 34-86, 502-625)

Sequence

> 1hhs_A_cm_2 (A: 34-86, 502-625) P2 PROTEIN
EGAIETYEGLLSVDPRFLSFKNELSRYLTDHFPANVDEYGRVYGNGVRTNFFGLYDSRRE
PGSAIFVGNINSMLNNQFSPEYGVQSGVRDRSKRKRPFPGLAWASMKDTYGACPIYSDVL
EAIERCWWNAFGESYRAYREDMLKRDTLELSRYVASMARQAGLAELTPIDLEVLADP

Coordinates

1hhs_A_cm_3 (A: 87-94, 205-222, 248-269)

Sequence

> 1hhs_A_cm_3 (A: 87-94, 205-222, 248-269) P2 PROTEIN
MRHMNGFPAQSTDAITLDPKTGKFVSDASRLKEQYGIDVPDGFFCERR

Coordinates