1i50_A

PDB Headers (abridged)

HEADER    TRANSCRIPTION                           23-FEB-01   1I50              
TITLE     RNA POLYMERASE II CRYSTAL FORM II AT 2.8 A RESOLUTION                 
COMPND   2 MOLECULE: DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT;            
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    P.CRAMER,D.A.BUSHNELL,R.D.KORNBERG                                    
TITLE     RNA POLYMERASE II CRYSTAL FORM II AT 2.8 A RESOLUTION                 
COMPND   2 MOLECULE: DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT;            
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    P.CRAMER,D.A.BUSHNELL,R.D.KORNBERG

Sequence

> 1i50_A (A:) DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT
VGQQYSSAPLRTVKEVQFGLFSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLGSI
DRNLKCQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLDEHNEL
MRQALAIKDSKKRFAAIWTLCKTKMVCETDVPSEDDPTQLVSRGGCGNTQPTIRKDGLKL
VGSWKKDRATGDADEPELRVLSTEEILNIFKHISVKDFTSLGFNEVFSRPEWMILTCLPV
PPPPVRPSISFNESQRGEDDLTFKLADILKANISLETLEHNGAPHHAIEEAESLLQFHVA
TYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLEL
DQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRDSGDRIDLRYSKRA
GDIQLQYGWKVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNAD
FDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFI
ELDQVLNMLYWVPDWDGVIPTPAIIKPKPLWSGKQILSVAIPNGIHLQRFDEGTTLLSPK
DNGMLIIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLFGNIQKVVNFWLLHNG
FSTGIGDTIADGPTMREITETIAEAKKKVLDVTKEAQANLLTAKHGMTLRESFEDNVVRF
LNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQQSVEGKRIAFGFVD
RTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRL
VKALEDIMVHYDNTTRNSLGNVIQFIYGEDGMDAAHIEKQSLDTIGGSDAAFEKRYRVDL
LNTDHTLDPSLLESGSEILGDLKLQVLLDEEYKQLVKDRKFLREVFVDGEANWPLPVNIR
RIIQNAQQTFHIDHTKPSDLTIKDIVLGVKDLQENLLVLRGKNEIIQNAQRDAVTLFCCL
LRSRLATRRVLQEYRLTKQAFDWVLSNIEAQFLRSVVHPGEMVGVLAAQSIGEPATQMTL
KKVTSGVPRLKEILNVAKNMKTPSLTVYLEPGHAADQEQAKLIRSAIEHTTLKSVTIASE
IYYDPDPRSTVIPEDEEIIQLHFSLQQSPWLLRLELDRAAMNDKDLTMGQVGERIKQTFK
NDLFVIWSEDNDEKLIIRCRVVAEEDHMLKKIENTMLENITLRGVENIERVVMMKYDRKV
PSPTGEYVKEPEWVLETDGVNLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRAALYKE
VYNVIASDGSYVNYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFE
AGASAELDDCRGVSENVILGQMAPIGTGAFDVMIDEESL

Coordinates

Link to SCOP

Link to Pfam

Link to Protein Data Bank

Structural Domains (with extensions added by structural compactness)

1i50_A_str_1 (A: 2-58, 81-90, 236-342)

Sequence

> 1i50_A_str_1 (A: 2-58, 81-90, 236-342) DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT
VGQQYSSAPLRTVKEVQFGLFSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLFGH
IDLAKPVLTCLPVPPPPVRPSISFNESQRGEDDLTFKLADILKANISLETLEHNGAPHHA
IEEAESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMG

Coordinates

1i50_A_str_2 (A: 59-80)

Sequence

> 1i50_A_str_2 (A: 59-80) DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT
GSIDRNLKCQTCQEGMNECPGH

Coordinates

1i50_A_str_3 (A: 91-235)

Sequence

> 1i50_A_str_3 (A: 91-235) DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT
FHVGFIAKIKKVCECVCMHCGKLLLDEHNELMRQALAIKDSKKRFAAIWTLCKTKMVCET
DVPSEDDPTQLVSRGGCGNTQPTIRKDGLKLVGSWKKDRATGDADEPELRVLSTEEILNI
FKHISVKDFTSLGFNEVFSRPEWMI

Coordinates

1i50_A_str_4 (A: 343-371, 436-515)

Sequence

> 1i50_A_str_4 (A: 343-371, 436-515) DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT
KRVDFSARTVISGDPNLELDQVGVPKSIAIMDNDPVLFNRQPSLHKMSMMAHRVKVIPYS
TFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQ

Coordinates

1i50_A_str_5 (A: 372-435)

Sequence

> 1i50_A_str_5 (A: 372-435) DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT
KTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRDSGDRIDLRYSKRAGDIQLQYGWK
VERH

Coordinates

1i50_A_str_6 (A: 516-535, 574-662)

Sequence

> 1i50_A_str_6 (A: 516-535, 574-662) DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT
SNKPCMGIVQDTLCGIRKLTGKQILSVAIPNGIHLQRFDEGTTLLSPKDNGMLIIDGQII
FGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLFGNIQKVVNFWLLHNGF

Coordinates

1i50_A_str_7 (A: 536-573)

Sequence

> 1i50_A_str_7 (A: 536-573) DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT
LRDTFIELDQVLNMLYWVPDWDGVIPTPAIIKPKPLWS

Coordinates

1i50_A_str_8 (A: 663-825)

Sequence

> 1i50_A_str_8 (A: 663-825) DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT
STGIGDTIADGPTMREITETIAEAKKKVLDVTKEAQANLLTAKHGMTLRESFEDNVVRFL
NEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQQSVEGKRIAFGFVDR
TLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLI

Coordinates

1i50_A_str_9 (A: 826-845, 1065-1113, 1331-1385)

Sequence

> 1i50_A_str_9 (A: 826-845, 1065-1113, 1331-1385) DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT
DTAVKTAETGYIQRRLVKALGVLAAQSIGEPATQMTLKKVTSGVPRLKEILNVAKNMKTS
FIDIMEVLGIEAGRAALYKEVYNVIASDGSYVNYRHMALLVDVMTTQGGLTSVT

Coordinates

1i50_A_str_10 (A: 846-868, 1059-1064)

Sequence

> 1i50_A_str_10 (A: 846-868, 1059-1064) DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT
EDIMVHYDNTTRNSLGNVIQFIYHPGEMV

Coordinates

1i50_A_str_11 (A: 869-1058)

Sequence

> 1i50_A_str_11 (A: 869-1058) DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT
GEDGMDAAHIEKQSLDTIGGSDAAFEKRYRVDLLNTDHTLDPSLLESGSEILGDLKLQVL
LDEEYKQLVKDRKFLREVFVDGEANWPLPVNIRRIIQNAQQTFHIDHTKPSDLTIKDIVL
GVKDLQENLLVLRGKNEIIQNAQRDAVTLFCCLLRSRLATRRVLQEYRLTKQAFDWVLSN
IEAQFLRSVV

Coordinates

1i50_A_str_12 (A: 1114-1140, 1275-1330)

Sequence

> 1i50_A_str_12 (A: 1114-1140, 1275-1330) DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT
PSLTVYLEPGHAADQEQAKLIRSAIEHGVENIERVVMMKYDRKVPSPTGEYVKEPEWVLE
TDGVNLSEVMTVPGIDPTRIYTN

Coordinates

1i50_A_str_13 (A: 1141-1274)

Sequence

> 1i50_A_str_13 (A: 1141-1274) DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT
TTLKSVTIASEIYYDPDPRSTVIPEDEEIIQLHFSLQQSPWLLRLELDRAAMNDKDLTMG
QVGERIKQTFKNDLFVIWSEDNDEKLIIRCRVVAEEDHMLKKIENTMLENITLR

Coordinates

1i50_A_str_14 (A: 1386-1450)

Sequence

> 1i50_A_str_14 (A: 1386-1450) DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT
RHGFNRSNTGALMRCSFEETVEILFEAGASAELDDCRGVSENVILGQMAPIGTGAFDVMI
DEESL

Coordinates

Structural Domains (with extensions added by sequence continuity)

1i50_A_seq_1 (A: 2-58, 81-90, 236-342)

Sequence

> 1i50_A_seq_1 (A: 2-58, 81-90, 236-342) DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT
VGQQYSSAPLRTVKEVQFGLFSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLFGH
IDLAKPVLTCLPVPPPPVRPSISFNESQRGEDDLTFKLADILKANISLETLEHNGAPHHA
IEEAESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMG

Coordinates

1i50_A_seq_2 (A: 59-80)

Sequence

> 1i50_A_seq_2 (A: 59-80) DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT
GSIDRNLKCQTCQEGMNECPGH

Coordinates

1i50_A_seq_3 (A: 91-235)

Sequence

> 1i50_A_seq_3 (A: 91-235) DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT
FHVGFIAKIKKVCECVCMHCGKLLLDEHNELMRQALAIKDSKKRFAAIWTLCKTKMVCET
DVPSEDDPTQLVSRGGCGNTQPTIRKDGLKLVGSWKKDRATGDADEPELRVLSTEEILNI
FKHISVKDFTSLGFNEVFSRPEWMI

Coordinates

1i50_A_seq_4 (A: 343-371, 436-515)

Sequence

> 1i50_A_seq_4 (A: 343-371, 436-515) DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT
KRVDFSARTVISGDPNLELDQVGVPKSIAIMDNDPVLFNRQPSLHKMSMMAHRVKVIPYS
TFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQ

Coordinates

1i50_A_seq_5 (A: 372-435)

Sequence

> 1i50_A_seq_5 (A: 372-435) DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT
KTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRDSGDRIDLRYSKRAGDIQLQYGWK
VERH

Coordinates

1i50_A_seq_6 (A: 516-535, 574-662)

Sequence

> 1i50_A_seq_6 (A: 516-535, 574-662) DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT
SNKPCMGIVQDTLCGIRKLTGKQILSVAIPNGIHLQRFDEGTTLLSPKDNGMLIIDGQII
FGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLFGNIQKVVNFWLLHNGF

Coordinates

1i50_A_seq_7 (A: 536-573)

Sequence

> 1i50_A_seq_7 (A: 536-573) DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT
LRDTFIELDQVLNMLYWVPDWDGVIPTPAIIKPKPLWS

Coordinates

1i50_A_seq_8 (A: 663-825)

Sequence

> 1i50_A_seq_8 (A: 663-825) DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT
STGIGDTIADGPTMREITETIAEAKKKVLDVTKEAQANLLTAKHGMTLRESFEDNVVRFL
NEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQQSVEGKRIAFGFVDR
TLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLI

Coordinates

1i50_A_seq_9 (A: 826-845, 1065-1113, 1331-1385)

Sequence

> 1i50_A_seq_9 (A: 826-845, 1065-1113, 1331-1385) DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT
DTAVKTAETGYIQRRLVKALGVLAAQSIGEPATQMTLKKVTSGVPRLKEILNVAKNMKTS
FIDIMEVLGIEAGRAALYKEVYNVIASDGSYVNYRHMALLVDVMTTQGGLTSVT

Coordinates

1i50_A_seq_10 (A: 846-868, 1059-1064)

Sequence

> 1i50_A_seq_10 (A: 846-868, 1059-1064) DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT
EDIMVHYDNTTRNSLGNVIQFIYHPGEMV

Coordinates

1i50_A_seq_11 (A: 869-1058)

Sequence

> 1i50_A_seq_11 (A: 869-1058) DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT
GEDGMDAAHIEKQSLDTIGGSDAAFEKRYRVDLLNTDHTLDPSLLESGSEILGDLKLQVL
LDEEYKQLVKDRKFLREVFVDGEANWPLPVNIRRIIQNAQQTFHIDHTKPSDLTIKDIVL
GVKDLQENLLVLRGKNEIIQNAQRDAVTLFCCLLRSRLATRRVLQEYRLTKQAFDWVLSN
IEAQFLRSVV

Coordinates

1i50_A_seq_12 (A: 1114-1140, 1275-1330)

Sequence

> 1i50_A_seq_12 (A: 1114-1140, 1275-1330) DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT
PSLTVYLEPGHAADQEQAKLIRSAIEHGVENIERVVMMKYDRKVPSPTGEYVKEPEWVLE
TDGVNLSEVMTVPGIDPTRIYTN

Coordinates

1i50_A_seq_13 (A: 1141-1274)

Sequence

> 1i50_A_seq_13 (A: 1141-1274) DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT
TTLKSVTIASEIYYDPDPRSTVIPEDEEIIQLHFSLQQSPWLLRLELDRAAMNDKDLTMG
QVGERIKQTFKNDLFVIWSEDNDEKLIIRCRVVAEEDHMLKKIENTMLENITLR

Coordinates

1i50_A_seq_14 (A: 1386-1450)

Sequence

> 1i50_A_seq_14 (A: 1386-1450) DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT
RHGFNRSNTGALMRCSFEETVEILFEAGASAELDDCRGVSENVILGQMAPIGTGAFDVMI
DEESL

Coordinates

Extensions (N/C terminal extensions and linkers)

1i50_A_ext_1 (A: 2-21)

Sequence

> 1i50_A_ext_1 (A: 2-21) DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT
VGQQYSSAPLRTVKEVQFGL

Coordinates