HEADER    BLOOD CLOTTING                          18-JUL-01   1JMJ              
TITLE     CRYSTAL STRUCTURE OF NATIVE HEPARIN COFACTOR II                       
COMPND   2 MOLECULE: HEPARIN COFACTOR II;                                       
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    T.P.BAGLIN,R.W.CARRELL,F.C.CHURCH,J.A.HUNTINGTON                      

> 1jmj_A (A:) HEPARIN COFACTOR II
LDLEKIFSEDDLQLFHGKSRIQRLNILNAKFAFNLYRVLKDQVNTFDNIFIAPVGISTAM
GMISLGLKGETHEQVHSILHFKDFVNASSKYEITTIHNLFRKLTHRLFRRNFGYTLRSVN
DLYIQKQFPILLDFKTKVREYYFAEAQIADFSDPAFISKTNNHIMKLTKGLIKDALENID
PATQMMILNCIYFKGSWVNKFPVEMTHNHNFRLNEREVVKVSMMQTKGNFLAANDQELDC
DILQLEYVGGISMLIVVPHKMSGMKTLEAQLTPRVVERWQKSMTNRTREVLLPKFKLEKN
YNLVESLKLMGIRMLFDKNGNMAGISDQRIAIDLFKHQGTITVNEEGTQATTVTTVGFMP
LSTQVRFTVDRPFLFLIYEHRTSCLLFMGRVANPSRS

Structural Domains (with extensions added by structural compactness)

1jmj_A_str_1 (A: 95-134, 448-480)

Sequence

> 1jmj_A_str_1 (A: 95-134, 448-480) HEPARIN COFACTOR II
LQLFHGKSRIQRLNILNAKFAFNLYRVLKDQVNTFDNIFIVRFTVDRPFLFLIYEHRTSC
LLFMGRVANPSRS

Coordinates

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1jmj_A_str_2 (A: 135-283, 377-447)

Sequence

> 1jmj_A_str_2 (A: 135-283, 377-447) HEPARIN COFACTOR II
APVGISTAMGMISLGLKGETHEQVHSILHFKDFVNASSKYEITTIHNLFRKLTHRLFRRN
FGYTLRSVNDLYIQKQFPILLDFKTKVREYYFAEAQIADFSDPAFISKTNNHIMKLTKGL
IKDALENIDPATQMMILNCIYFKGSWVNKKFKLEKNYNLVESLKLMGIRMLFDKNGNMAG
ISDQRIAIDLFKHQGTITVNEEGTQATTVTTVGFMPLSTQ

Coordinates

---

1jmj_A_str_3 (A: 284-311, 371-376)

Sequence

> 1jmj_A_str_3 (A: 284-311, 371-376) HEPARIN COFACTOR II
FPVEMTHNHNFRLNEREVVKVSMMQTKGREVLLP

Coordinates

---

1jmj_A_str_4 (A: 312-370)

Sequence

> 1jmj_A_str_4 (A: 312-370) HEPARIN COFACTOR II
NFLAANDQELDCDILQLEYVGGISMLIVVPHKMSGMKTLEAQLTPRVVERWQKSMTNRT

Coordinates

Structural Domains (with extensions added by sequence continuity)

1jmj_A_seq_1 (A: 61-134, 448-480)

Sequence

> 1jmj_A_seq_1 (A: 61-134, 448-480) HEPARIN COFACTOR II
LDLEKIFSEDDLQLFHGKSRIQRLNILNAKFAFNLYRVLKDQVNTFDNIFIVRFTVDRPF
LFLIYEHRTSCLLFMGRVANPSRS

Coordinates

---

1jmj_A_seq_2 (A: 135-283, 377-447)

Sequence

> 1jmj_A_seq_2 (A: 135-283, 377-447) HEPARIN COFACTOR II
APVGISTAMGMISLGLKGETHEQVHSILHFKDFVNASSKYEITTIHNLFRKLTHRLFRRN
FGYTLRSVNDLYIQKQFPILLDFKTKVREYYFAEAQIADFSDPAFISKTNNHIMKLTKGL
IKDALENIDPATQMMILNCIYFKGSWVNKKFKLEKNYNLVESLKLMGIRMLFDKNGNMAG
ISDQRIAIDLFKHQGTITVNEEGTQATTVTTVGFMPLSTQ

Coordinates

---

1jmj_A_seq_3 (A: 284-311, 371-376)

Sequence

> 1jmj_A_seq_3 (A: 284-311, 371-376) HEPARIN COFACTOR II
FPVEMTHNHNFRLNEREVVKVSMMQTKGREVLLP

Coordinates

---

1jmj_A_seq_4 (A: 312-370)

Sequence

> 1jmj_A_seq_4 (A: 312-370) HEPARIN COFACTOR II
NFLAANDQELDCDILQLEYVGGISMLIVVPHKMSGMKTLEAQLTPRVVERWQKSMTNRT

Coordinates

Extensions (N/C terminal extensions and linkers)

1jmj_A_ext_1 (A: 61-71)

Sequence

> 1jmj_A_ext_1 (A: 61-71) HEPARIN COFACTOR II
LDLEKIFSEDD

Coordinates

Composite domains

1jmj_A_cm_1 (A: 95-134, 284-376, 448-480)

Sequence

> 1jmj_A_cm_1 (A: 95-134, 284-376, 448-480) HEPARIN COFACTOR II
LQLFHGKSRIQRLNILNAKFAFNLYRVLKDQVNTFDNIFIFPVEMTHNHNFRLNEREVVK
VSMMQTKGNFLAANDQELDCDILQLEYVGGISMLIVVPHKMSGMKTLEAQLTPRVVERWQ
KSMTNRTREVLLPVRFTVDRPFLFLIYEHRTSCLLFMGRVANPSRS

Coordinates