1khv_A

PDB Headers (abridged)

HEADER    TRANSFERASE                             01-DEC-01   1KHV              
TITLE     CRYSTAL STRUCTURE OF RABBIT HEMORRHAGIC DISEASE VIRUS RNA-            
TITLE    2 DEPENDENT RNA POLYMERASE COMPLEXED WITH LU3+                         
COMPND   2 MOLECULE: RNA-DIRECTED RNA POLYMERASE;                               
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    K.K.NG,M.M.CHERNEY,A.L.VAZQUEZ,A.MACHIN,J.M.ALONSO,F.PARRA,           
AUTHOR   2 M.N.JAMES

Sequence

> 1khv_A (A:) RNA-DIRECTED RNA POLYMERASE
FCGEPIDYRGITAHRLVGAEPRPPVSGTRYAKVPGVPDEYKTGYRPANLGRSDPDSDKSL
MNIAVKNLQVYQQEPKLDKVDEFIERAAADVLGYLRFLTKGERQANLNFKAAFNTLDLST
SCGPFVPGKKIDHVKDGVMDQVLAKHLYKCWSVANSGKALHHIYACGLKDELRPLDGKKR
LLWGCDVGVAVCAAAVFHNICYKLKMVARFGPIAVGVDMTSRDVDVIINNLTSKASDFLC
LDYSKWDSTMSPCVVRLAIDILADCCEQTELTKSVVLTLKSHPMTILDAMIVQTKRGLPS
GMPFTSVINSICHWLLWSAAVYKSCAEIGLHCSNLYEDAPFYTYGDDGVYAMTPMMVSLL
PAIIENLRDYGLSPTAADKTEFIDVCPLNKISFLKRTFELTDIGWVSKLDKSSILRQLEW
SKTTSRHMVIEETYDLAKEERGVQLEELQVAAAAHGQEFFNFVCRELERQQAYTQFSVYS
YDAARKILADRKR

Coordinates

Link to SCOP

Link to Pfam

Link to Protein Data Bank

Structural Domains (with extensions added by structural compactness)

1khv_A_str_1 (A: 5-211)

Sequence

> 1khv_A_str_1 (A: 5-211) RNA-DIRECTED RNA POLYMERASE
FCGEPIDYRGITAHRLVGAEPRPPVSGTRYAKVPGVPDEYKTGYRPANLGRSDPDSDKSL
MNIAVKNLQVYQQEPKLDKVDEFIERAAADVLGYLRFLTKGERQANLNFKAAFNTLDLST
SCGPFVPGKKIDHVKDGVMDQVLAKHLYKCWSVANSGKALHHIYACGLKDELRPLDGKKR
LLWGCDVGVAVCAAAVFHNICYK

Coordinates

1khv_A_str_2 (A: 212-254, 318-406)

Sequence

> 1khv_A_str_2 (A: 212-254, 318-406) RNA-DIRECTED RNA POLYMERASE
LKMVARFGPIAVGVDMTSRDVDVIINNLTSKASDFLCLDYSKWSICHWLLWSAAVYKSCA
EIGLHCSNLYEDAPFYTYGDDGVYAMTPMMVSLLPAIIENLRDYGLSPTAADKTEFIDVC
PLNKISFLKRTF

Coordinates

1khv_A_str_3 (A: 255-317)

Sequence

> 1khv_A_str_3 (A: 255-317) RNA-DIRECTED RNA POLYMERASE
DSTMSPCVVRLAIDILADCCEQTELTKSVVLTLKSHPMTILDAMIVQTKRGLPSGMPFTS
VIN

Coordinates

1khv_A_str_4 (A: 407-501)

Sequence

> 1khv_A_str_4 (A: 407-501) RNA-DIRECTED RNA POLYMERASE
ELTDIGWVSKLDKSSILRQLEWSKTTSRHMVIEETYDLAKEERGVQLEELQVAAAAHGQE
FFNFVCRELERQQAYTQFSVYSYDAARKILADRKR

Coordinates

Structural Domains (with extensions added by sequence continuity)

1khv_A_seq_1 (A: 5-211)

Sequence

> 1khv_A_seq_1 (A: 5-211) RNA-DIRECTED RNA POLYMERASE
FCGEPIDYRGITAHRLVGAEPRPPVSGTRYAKVPGVPDEYKTGYRPANLGRSDPDSDKSL
MNIAVKNLQVYQQEPKLDKVDEFIERAAADVLGYLRFLTKGERQANLNFKAAFNTLDLST
SCGPFVPGKKIDHVKDGVMDQVLAKHLYKCWSVANSGKALHHIYACGLKDELRPLDGKKR
LLWGCDVGVAVCAAAVFHNICYK

Coordinates

1khv_A_seq_2 (A: 212-254, 318-406)

Sequence

> 1khv_A_seq_2 (A: 212-254, 318-406) RNA-DIRECTED RNA POLYMERASE
LKMVARFGPIAVGVDMTSRDVDVIINNLTSKASDFLCLDYSKWSICHWLLWSAAVYKSCA
EIGLHCSNLYEDAPFYTYGDDGVYAMTPMMVSLLPAIIENLRDYGLSPTAADKTEFIDVC
PLNKISFLKRTF

Coordinates

1khv_A_seq_3 (A: 255-317)

Sequence

> 1khv_A_seq_3 (A: 255-317) RNA-DIRECTED RNA POLYMERASE
DSTMSPCVVRLAIDILADCCEQTELTKSVVLTLKSHPMTILDAMIVQTKRGLPSGMPFTS
VIN

Coordinates

1khv_A_seq_4 (A: 407-501)

Sequence

> 1khv_A_seq_4 (A: 407-501) RNA-DIRECTED RNA POLYMERASE
ELTDIGWVSKLDKSSILRQLEWSKTTSRHMVIEETYDLAKEERGVQLEELQVAAAAHGQE
FFNFVCRELERQQAYTQFSVYSYDAARKILADRKR

Coordinates

Extensions (N/C terminal extensions and linkers)

1khv_A_ext_1 (A: 32-51)

Sequence

> 1khv_A_ext_1 (A: 32-51) RNA-DIRECTED RNA POLYMERASE
TRYAKVPGVPDEYKTGYRPA

Coordinates

1khv_A_ext_2 (A: 174-187)

Sequence

> 1khv_A_ext_2 (A: 174-187) RNA-DIRECTED RNA POLYMERASE
DELRPLDGKK

Coordinates

Composite domains

1khv_A_cm_1 (A: 5-31, 52-173, 188-211, 255-317)

Sequence

> 1khv_A_cm_1 (A: 5-31, 52-173, 188-211, 255-317) RNA-DIRECTED RNA POLYMERASE
FCGEPIDYRGITAHRLVGAEPRPPVSGNLGRSDPDSDKSLMNIAVKNLQVYQQEPKLDKV
DEFIERAAADVLGYLRFLTKGERQANLNFKAAFNTLDLSTSCGPFVPGKKIDHVKDGVMD
QVLAKHLYKCWSVANSGKALHHIYACGLKRLLWGCDVGVAVCAAAVFHNICYKDSTMSPC
VVRLAIDILADCCEQTELTKSVVLTLKSHPMTILDAMIVQTKRGLPSGMPFTSVIN

Coordinates

1khv_A_cm_2 (A: 32-46, 407-501)

Sequence

> 1khv_A_cm_2 (A: 32-46, 407-501) RNA-DIRECTED RNA POLYMERASE
TRYAKVPGVPDEYKTELTDIGWVSKLDKSSILRQLEWSKTTSRHMVIEETYDLAKEERGV
QLEELQVAAAAHGQEFFNFVCRELERQQAYTQFSVYSYDAARKILADRKR

Coordinates

1khv_A_cm_3 (A: 47-51, 174-187)

Sequence

> 1khv_A_cm_3 (A: 47-51, 174-187) RNA-DIRECTED RNA POLYMERASE
GYRPADELRPLDGKK

Coordinates