1msw_D

PDB Headers (abridged)

HEADER    TRANSCRIPTION/DNA/RNA                   19-SEP-02   1MSW              
TITLE     STRUCTURAL BASIS FOR THE TRANSITION FROM INITIATION TO                
TITLE    2 ELONGATION TRANSCRIPTION IN T7 RNA POLYMERASE                        
COMPND   2 MOLECULE: DNA-DIRECTED RNA POLYMERASE;                               
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    Y.W.YIN,T.A.STEITZ

Sequence

> 1msw_D (D:) DNA-DIRECTED RNA POLYMERASE
NTINIAKNDFSDIELAAIPFNTLADHYGERLAREQLALEHESYEMGEARFRKMFERQLKA
GEVADNAAAKPLITTLLPKMIARINDWFEEVKAKRGKRPTAFQFLQEIKPEAVAYITIKT
TLACLTSADNTTVQAVASAIGRAIEDEARFGRIRDLEAKHFKKNVEEQLNKRVGHVYKKA
FMQVVEADMLSKGLLGGEAWSSWHKEDSIHVGVRCIEMLIESTGMVSLHRQSETIELAPE
YAEAIATRAGALAGISPMFQPCVVPPKPWTGITGGGYWANGRRPLALVRTHSKKALMRYE
DVYMPEVYKAINIAQNTAWKINKKVLAVANVITKWKHCPVEDIPAIEREELPMKTAWKRA
AAAVYRKDKARKSRRISLEFMLEQANKFANHKAIWFPYNMDWRGRVYAVSMFNPQGNDMT
KGLLTLAKGKPIGKEGYYWLKIHGANCAGVDKVPFPERIKFIEENHENIMACAKSPLENT
WWAEQDSPFCFLAFCFEYAGVQHHGLSYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAVN
LLPSETVQDIYGIVAKKVNEILQADAINGTDNEVVTVTDENTGEISEKVKLGTKALAGQW
LAYGVTRSVTKRSVMTLAYGSKEFGFRQQVLEDTIQPAIDSGKGLMFTQPNQAAGYMAKL
IWESVSVTVVAAVEAMNWLKSAAKLLAAEVKDKKTGEILRKRCAVHWVTPDGFPVWQEYK
KPIQTRLNLMFLGQFRLQPTINTNKDSEIDAHKQESGIAPNFVHSQDGSHLRKTVVWAHE
KYGIESFALIHDSFGTIPADAANLFKAVRETMVDTYESCDVLADFYDQFADQLHESQLDK
MPALPAKGNLNLRDILESDFAFA

Coordinates

Link to SCOP

Link to Pfam

Link to Protein Data Bank

Structural Domains (with extensions added by structural compactness)

1msw_D_str_1 (D: 2-73, 248-311)

Sequence

> 1msw_D_str_1 (D: 2-73, 248-311) DNA-DIRECTED RNA POLYMERASE
NTINIAKNDFSDIELAAIPFNTLADHYGERLAREQLALEHESYEMGEARFRKMFERQLKA
GEVADNAAAKPLPEYAEAIATRAGALAGISPMFQPCVVPPKPWTGITGGGYWANGRRPLA
LVRTHSKKALMRYEDV

Coordinates

1msw_D_str_2 (D: 74-146, 204-247)

Sequence

> 1msw_D_str_2 (D: 74-146, 204-247) DNA-DIRECTED RNA POLYMERASE
ITTLLPKMIARINDWFEEVKAKRGKRPTAFQFLQEIKPEAVAYITIKTTLACLTSADNTT
VQAVASAIGRAIEWHKEDSIHVGVRCIEMLIESTGMVSLHRQSETIELA

Coordinates

1msw_D_str_3 (D: 147-203)

Sequence

> 1msw_D_str_3 (D: 147-203) DNA-DIRECTED RNA POLYMERASE
DEARFGRIRDLEAKHFKKNVEEQLNKRVGHVYKKAFMQVVEADMLSKGLLGGEAWSS

Coordinates

1msw_D_str_4 (D: 312-329, 413-433)

Sequence

> 1msw_D_str_4 (D: 312-329, 413-433) DNA-DIRECTED RNA POLYMERASE
YMPEVYKAINIAQNTAWKAIWFPYNMDWRGRVYAVSMFN

Coordinates

1msw_D_str_5 (D: 330-412)

Sequence

> 1msw_D_str_5 (D: 330-412) DNA-DIRECTED RNA POLYMERASE
INKKVLAVANVITKWKHCPVEDIPAIEREELPMKTAWKRAAAAVYRKDKARKSRRISLEF
MLEQANKFANHK

Coordinates

1msw_D_str_6 (D: 434-451, 529-541, 788-883)

Sequence

> 1msw_D_str_6 (D: 434-451, 529-541, 788-883) DNA-DIRECTED RNA POLYMERASE
PQGNDMTKGLLTLAKGKPNCSLPLAFDGSCSGSHLRKTVVWAHEKYGIESFALIHDSFGT
IPADAANLFKAVRETMVDTYESCDVLADFYDQFADQLHESQLDKMPALPAKGNLNLRDIL
ESDFAFA

Coordinates

1msw_D_str_7 (D: 452-528)

Sequence

> 1msw_D_str_7 (D: 452-528) DNA-DIRECTED RNA POLYMERASE
IGKEGYYWLKIHGANCAGVDKVPFPERIKFIEENHENIMACAKSPLENTWWAEQDSPFCF
LAFCFEYAGVQHHGLSY

Coordinates

1msw_D_str_8 (D: 542-550, 695-787)

Sequence

> 1msw_D_str_8 (D: 542-550, 695-787) DNA-DIRECTED RNA POLYMERASE
GIQHFSAMLAMNWLKSAAKLLAAEVKDKKTGEILRKRCAVHWVTPDGFPVWQEYKKPIQT
RLNLMFLGQFRLQPTINTNKDSEIDAHKQESGIAPNFVHSQD

Coordinates

1msw_D_str_9 (D: 551-694)

Sequence

> 1msw_D_str_9 (D: 551-694) DNA-DIRECTED RNA POLYMERASE
RDEVGGRAVNLLPSETVQDIYGIVAKKVNEILQADAINGTDNEVVTVTDENTGEISEKVK
LGTKALAGQWLAYGVTRSVTKRSVMTLAYGSKEFGFRQQVLEDTIQPAIDSGKGLMFTQP
NQAAGYMAKLIWESVSVTVVAAVE

Coordinates

Structural Domains (with extensions added by sequence continuity)

1msw_D_seq_1 (D: 2-73, 248-311)

Sequence

> 1msw_D_seq_1 (D: 2-73, 248-311) DNA-DIRECTED RNA POLYMERASE
NTINIAKNDFSDIELAAIPFNTLADHYGERLAREQLALEHESYEMGEARFRKMFERQLKA
GEVADNAAAKPLPEYAEAIATRAGALAGISPMFQPCVVPPKPWTGITGGGYWANGRRPLA
LVRTHSKKALMRYEDV

Coordinates

1msw_D_seq_2 (D: 74-146, 204-247)

Sequence

> 1msw_D_seq_2 (D: 74-146, 204-247) DNA-DIRECTED RNA POLYMERASE
ITTLLPKMIARINDWFEEVKAKRGKRPTAFQFLQEIKPEAVAYITIKTTLACLTSADNTT
VQAVASAIGRAIEWHKEDSIHVGVRCIEMLIESTGMVSLHRQSETIELA

Coordinates

1msw_D_seq_3 (D: 147-203)

Sequence

> 1msw_D_seq_3 (D: 147-203) DNA-DIRECTED RNA POLYMERASE
DEARFGRIRDLEAKHFKKNVEEQLNKRVGHVYKKAFMQVVEADMLSKGLLGGEAWSS

Coordinates

1msw_D_seq_4 (D: 312-329, 413-433)

Sequence

> 1msw_D_seq_4 (D: 312-329, 413-433) DNA-DIRECTED RNA POLYMERASE
YMPEVYKAINIAQNTAWKAIWFPYNMDWRGRVYAVSMFN

Coordinates

1msw_D_seq_5 (D: 330-412)

Sequence

> 1msw_D_seq_5 (D: 330-412) DNA-DIRECTED RNA POLYMERASE
INKKVLAVANVITKWKHCPVEDIPAIEREELPMKTAWKRAAAAVYRKDKARKSRRISLEF
MLEQANKFANHK

Coordinates

1msw_D_seq_6 (D: 434-451, 529-541, 788-883)

Sequence

> 1msw_D_seq_6 (D: 434-451, 529-541, 788-883) DNA-DIRECTED RNA POLYMERASE
PQGNDMTKGLLTLAKGKPNCSLPLAFDGSCSGSHLRKTVVWAHEKYGIESFALIHDSFGT
IPADAANLFKAVRETMVDTYESCDVLADFYDQFADQLHESQLDKMPALPAKGNLNLRDIL
ESDFAFA

Coordinates

1msw_D_seq_7 (D: 452-528)

Sequence

> 1msw_D_seq_7 (D: 452-528) DNA-DIRECTED RNA POLYMERASE
IGKEGYYWLKIHGANCAGVDKVPFPERIKFIEENHENIMACAKSPLENTWWAEQDSPFCF
LAFCFEYAGVQHHGLSY

Coordinates

1msw_D_seq_8 (D: 542-550, 695-787)

Sequence

> 1msw_D_seq_8 (D: 542-550, 695-787) DNA-DIRECTED RNA POLYMERASE
GIQHFSAMLAMNWLKSAAKLLAAEVKDKKTGEILRKRCAVHWVTPDGFPVWQEYKKPIQT
RLNLMFLGQFRLQPTINTNKDSEIDAHKQESGIAPNFVHSQD

Coordinates

1msw_D_seq_9 (D: 551-694)

Sequence

> 1msw_D_seq_9 (D: 551-694) DNA-DIRECTED RNA POLYMERASE
RDEVGGRAVNLLPSETVQDIYGIVAKKVNEILQADAINGTDNEVVTVTDENTGEISEKVK
LGTKALAGQWLAYGVTRSVTKRSVMTLAYGSKEFGFRQQVLEDTIQPAIDSGKGLMFTQP
NQAAGYMAKLIWESVSVTVVAAVE

Coordinates

Extensions (N/C terminal extensions and linkers)

1msw_D_ext_1 (D: 835-883)

Sequence

> 1msw_D_ext_1 (D: 835-883) DNA-DIRECTED RNA POLYMERASE
TYESCDVLADFYDQFADQLHESQLDKMPALPAKGNLNLRDILESDFAFA

Coordinates

Composite domains

1msw_D_cm_1 (D: 542-550, 695-787, 835-883)

Sequence

> 1msw_D_cm_1 (D: 542-550, 695-787, 835-883) DNA-DIRECTED RNA POLYMERASE
GIQHFSAMLAMNWLKSAAKLLAAEVKDKKTGEILRKRCAVHWVTPDGFPVWQEYKKPIQT
RLNLMFLGQFRLQPTINTNKDSEIDAHKQESGIAPNFVHSQDTYESCDVLADFYDQFADQ
LHESQLDKMPALPAKGNLNLRDILESDFAFA

Coordinates