1q8i_A

PDB Headers (abridged)

HEADER    TRANSFERASE                             21-AUG-03   1Q8I              
TITLE     CRYSTAL STRUCTURE OF ESCHERICHIA COLI DNA POLYMERASE II               
COMPND   2 MOLECULE: DNA POLYMERASE II;                                         
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    J.S.BRUNZELLE,C.R.A.MUCHMORE,N.MASHHOON,M.BLAIR-JOHNSON,              
AUTHOR   2 L.SHUVALOVA,M.F.GOODMAN,W.F.ANDERSON,MIDWEST CENTER FOR              
AUTHOR   3 STRUCTURAL GENOMICS (MCSG)

Sequence

> 1q8i_A (A:) DNA POLYMERASE II
AQAGFILTRHWRDTPQGTEVSFWLATDNGPLQVTLAPQESVAFIPADQVPRAQHILQGEQ
GFRLTPLALKDFHRQPVYGLYCRAHRQLMNYEKRLREGGVTVYEADVRPPERYLMERFIT
SPVWVEGDMHNGTIVNARLKPHPDYRPPLKWVSIDIETTRHGELYCIGLEGCGQRIVYML
GPENGDASSLDFELEYVASRPQLLEKLNAWFANYDPDVIIGWNVVQFDLRMLQKHAERYR
LPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALKSAFWNFSSFSLETVAQELL
MDEIDRRFAEDKPALATYNLKDCELVTQIFHKTEIMPFLLERATVNGLPVDRHGGSVAAF
GHLYFPRMHRAGYVAPNLGEVPPHASPGGYVMDSRPGLYDSVLVLDYKSLYPSIVRTFLI
DPVGLVEGMAQPDPEHSTEGFLDAWFSREKHCLPEIVTNIWHGRDEAKRQGNKPLSQALK
IIMNAFYGVLGTTACRFFDPRLASSITMRGHQIMRQTKALIEAQGYDVIYGDTDSTFVWL
KGAHSEEEAAKIGRALVQHVNAWWAETLQKQRLTSALELEYETHFCRFLMPTIRGADTGS
KKRYAGLIQEGDKQRMVFKGLETTDWTPLAQQFQQELYLRIFRNEPYQEYVRETIDKLMA
GELDARLVYSPLDYEHYLTRQLQPVAEGILPFIEDNFATLMTGQLGLF

Coordinates

Link to SCOP

Link to Pfam

Link to Protein Data Bank

Structural Domains (with extensions added by structural compactness)

1q8i_A_str_1 (A: 2-39, 110-150)

Sequence

> 1q8i_A_str_1 (A: 2-39, 110-150) DNA POLYMERASE II
AQAGFILTRHWRDTPQGTEVSFWLATDNGPLQVTLAPQPPERYLMERFITSPVWVEGDMH
NGTIVNARLKPHPDYRPPL

Coordinates

1q8i_A_str_2 (A: 40-109)

Sequence

> 1q8i_A_str_2 (A: 40-109) DNA POLYMERASE II
ESVAFIPADQVPRAQHILQGEQGFRLTPLALKDFHRQPVYGLYCRAHRQLMNYEKRLREG
GVTVYEADVR

Coordinates

1q8i_A_str_3 (A: 151-349)

Sequence

> 1q8i_A_str_3 (A: 151-349) DNA POLYMERASE II
KWVSIDIETTRHGELYCIGLEGCGQRIVYMLGPENGDASSLDFELEYVASRPQLLEKLNA
WFANYDPDVIIGWNVVQFDLRMLQKHAERYRLPLRLGRDNSELEWREHGFKNGVFFAQAK
GRLIIDGIEALKSAFWNFSSFSLETVAQELLMDEIDRRFAEDKPALATYNLKDCELVTQI
FHKTEIM

Coordinates

1q8i_A_str_4 (A: 350-401)

Sequence

> 1q8i_A_str_4 (A: 350-401) DNA POLYMERASE II
PFLLERATVNGLPVDRHGGSVAAFGHLYFPRMHRAGYVAPNLGEVPPHASPG

Coordinates

1q8i_A_str_5 (A: 402-423, 524-619)

Sequence

> 1q8i_A_str_5 (A: 402-423, 524-619) DNA POLYMERASE II
GYVMDSRPGLYDSVLVLDYKSLHQIMRQTKALIEAQGYDVIYGDTDSTFVWLKGAHSEEE
AAKIGRALVQHVNAWWAETLQKQRLTSALELEYETHFCRFLMPTIRGADTGSKKRYAG

Coordinates

1q8i_A_str_6 (A: 424-523)

Sequence

> 1q8i_A_str_6 (A: 424-523) DNA POLYMERASE II
YPSIVRTFLIDPVGLVEGMAQPDPEHSTEGFLDAWFSREKHCLPEIVTNIWHGRDEAKRQ
GNKPLSQALKIIMNAFYGVLGTTACRFFDPRLASSITMRG

Coordinates

1q8i_A_str_7 (A: 620-675, 749-783)

Sequence

> 1q8i_A_str_7 (A: 620-675, 749-783) DNA POLYMERASE II
LIQEGDKQRMVFKGLETTDWTPLAQQFQQELYLRIFRNEPYQEYVRETIDKLMAYEHYLT
RQLQPVAEGILPFIEDNFATLMTGQLGLF

Coordinates

1q8i_A_str_8 (A: 676-748)

Sequence

> 1q8i_A_str_8 (A: 676-748) DNA POLYMERASE II
GELDARLVYSPLD

Coordinates

Structural Domains (with extensions added by sequence continuity)

1q8i_A_seq_1 (A: 2-39, 110-150)

Sequence

> 1q8i_A_seq_1 (A: 2-39, 110-150) DNA POLYMERASE II
AQAGFILTRHWRDTPQGTEVSFWLATDNGPLQVTLAPQPPERYLMERFITSPVWVEGDMH
NGTIVNARLKPHPDYRPPL

Coordinates

1q8i_A_seq_2 (A: 40-109)

Sequence

> 1q8i_A_seq_2 (A: 40-109) DNA POLYMERASE II
ESVAFIPADQVPRAQHILQGEQGFRLTPLALKDFHRQPVYGLYCRAHRQLMNYEKRLREG
GVTVYEADVR

Coordinates

1q8i_A_seq_3 (A: 151-349)

Sequence

> 1q8i_A_seq_3 (A: 151-349) DNA POLYMERASE II
KWVSIDIETTRHGELYCIGLEGCGQRIVYMLGPENGDASSLDFELEYVASRPQLLEKLNA
WFANYDPDVIIGWNVVQFDLRMLQKHAERYRLPLRLGRDNSELEWREHGFKNGVFFAQAK
GRLIIDGIEALKSAFWNFSSFSLETVAQELLMDEIDRRFAEDKPALATYNLKDCELVTQI
FHKTEIM

Coordinates

1q8i_A_seq_4 (A: 350-401)

Sequence

> 1q8i_A_seq_4 (A: 350-401) DNA POLYMERASE II
PFLLERATVNGLPVDRHGGSVAAFGHLYFPRMHRAGYVAPNLGEVPPHASPG

Coordinates

1q8i_A_seq_5 (A: 402-423, 524-619)

Sequence

> 1q8i_A_seq_5 (A: 402-423, 524-619) DNA POLYMERASE II
GYVMDSRPGLYDSVLVLDYKSLHQIMRQTKALIEAQGYDVIYGDTDSTFVWLKGAHSEEE
AAKIGRALVQHVNAWWAETLQKQRLTSALELEYETHFCRFLMPTIRGADTGSKKRYAG

Coordinates

1q8i_A_seq_6 (A: 424-523)

Sequence

> 1q8i_A_seq_6 (A: 424-523) DNA POLYMERASE II
YPSIVRTFLIDPVGLVEGMAQPDPEHSTEGFLDAWFSREKHCLPEIVTNIWHGRDEAKRQ
GNKPLSQALKIIMNAFYGVLGTTACRFFDPRLASSITMRG

Coordinates

1q8i_A_seq_7 (A: 620-675, 749-783)

Sequence

> 1q8i_A_seq_7 (A: 620-675, 749-783) DNA POLYMERASE II
LIQEGDKQRMVFKGLETTDWTPLAQQFQQELYLRIFRNEPYQEYVRETIDKLMAYEHYLT
RQLQPVAEGILPFIEDNFATLMTGQLGLF

Coordinates

1q8i_A_seq_8 (A: 676-748)

Sequence

> 1q8i_A_seq_8 (A: 676-748) DNA POLYMERASE II
GELDARLVYSPLD

Coordinates

Composite domains

1q8i_A_cm_1 (A: 350-401, 424-523)

Sequence

> 1q8i_A_cm_1 (A: 350-401, 424-523) DNA POLYMERASE II
PFLLERATVNGLPVDRHGGSVAAFGHLYFPRMHRAGYVAPNLGEVPPHASPGYPSIVRTF
LIDPVGLVEGMAQPDPEHSTEGFLDAWFSREKHCLPEIVTNIWHGRDEAKRQGNKPLSQA
LKIIMNAFYGVLGTTACRFFDPRLASSITMRG

Coordinates