1smy_C

PDB Headers (abridged)

HEADER    TRANSFERASE                             10-MAR-04   1SMY              
TITLE     STRUCTURAL BASIS FOR TRANSCRIPTION REGULATION BY ALARMONE             
TITLE    2 PPGPP                                                                
COMPND   2 MOLECULE: DNA-DIRECTED RNA POLYMERASE ALPHA CHAIN;                   
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    I.ARTSIMOVITCH,V.PATLAN,S.SEKINE,M.N.VASSYLYEVA,T.HOSAKA,             
AUTHOR   2 K.OCHI,S.YOKOYAMA,D.G.VASSYLYEV

Sequence

> 1smy_C (C:) DNA-DIRECTED RNA POLYMERASE ALPHA CHAIN
MEIKRFGRIREVIPLPPLTEIQVESYRRALQADVPPEKRENVGIQAAFRETFPIEEEDKG
KGGLVLDFLEYRLGEPPFPQDECREKDLTYQAPLYARLQLIHKDTGLIKEDEVFLGHIPL
MTEDGSFIINGADRVIVSQIHRSPGVYFTPDPARPGRYIASIIPLPKRGPWIDLEVEPNG
VVSMKVNKRKFPLVLLLRVLGYDQETLARELGAYGELVQGLMDESVFAMRPEEALIRLFT
LLRPGDPPKRDKAVAYVYGLIADPRRYDLGEAGRYKAEEKLGIRLSGRTLARFEDGEFKD
EVFLPTLRYLFALTAGVPGHEVDDIDHLGNRRIRTVGELMTDQFRVGLARLARGVRERML
MGSEDSLTPAKLVNSRPLEAAIREFFSRSQLSQFKDETNPLSSLRHKRRISALGPGGLTR
ERAGFDVRDVHRTHYGRICPVETPEGANIGLITSLAAYARVDELGFIRTPYRRVVGGVVT
DEVVYMTATEEDRYTIAQANTPLEGNRIAAERVVARRKGEPVIVSPEEVEFMDVSPKQVF
SVNTNLIPFLEHDDANRALMGSNMQTQAVPLIRAQAPVVMTGLEERVVRDSLAALYAEED
GEVAKVDGNRIVVRYEDGRLVEYPLRRFYRSNQGTALDQRPRVVVGQRVRKGDLLADGPA
SENGFLALGQNVLVAIMPFDGYNFEDAIVISEELLKRDFYTSIHIERYEIEARDTKLGPE
RITRDIPHLSEAALRDLDEEGVVRIGAEVKPGDILVGRTSFKGESEPTPEERLLRSIFGE
KARDVKDTSLRVPPGEGGIVVRTVRLRRGDPGVELKPGVREVVRVYVAQKRKLQVGDKLA
NRHGNKGVVAKILPVEDMPHLPDGTPVDVILNPLGVPSRMNLGQILETHLGLAGYFLGQR
YISPIFDGAKEPEIKELLAQAFEVYFGKRKGEGFGVDKREVEVLRRAEKLGLVTPGKTPE
EQLKELFLQGKVVLYDGRTGEPIEGPIVVGQMFIMKLYHMVEDKMHARSTGPYSLITQQP
LGGKAQFGGQRFGEMEVWALEAYGAAHTLQEMLTLKSDDIEGRNAAYEAIIKGEDVPEPS
VPESFRVLVKELQALALDVQTLDEKDNPVDIFEGLASKR

Coordinates

Link to SCOP

Link to Pfam

Link to Protein Data Bank

Structural Domains (with extensions added by structural compactness)

1smy_C_str_1 (C: 1-134, 338-407)

Sequence

> 1smy_C_str_1 (C: 1-134, 338-407) DNA-DIRECTED RNA POLYMERASE ALPHA CHAIN
MEIKRFGRIREVIPLPPLTEIQVESYRRALQADVPPEKRENVGIQAAFRETFPIEEEDKG
KGGLVLDFLEYRLGEPPFPQDECREKDLTYQAPLYARLQLIHKDTGLIKEDEVFLGHIPL
MTEDGSFIINGADRELMTDQFRVGLARLARGVRERMLMGSEDSLTPAKLVNSRPLEAAIR
EFFSRSQLSQFKDETNPLSSLRHK

Coordinates

1smy_C_str_2 (C: 135-143, 325-337, 408-469)

Sequence

> 1smy_C_str_2 (C: 135-143, 325-337, 408-469) DNA-DIRECTED RNA POLYMERASE ALPHA CHAIN
VIVSQIHRSIDHLGNRRIRTVGRRISALGPGGLTRERAGFDVRDVHRTHYGRICPVETPE
GANIGLITSLAAYARVDELGFIRT

Coordinates

1smy_C_str_3 (C: 144-324)

Sequence

> 1smy_C_str_3 (C: 144-324) DNA-DIRECTED RNA POLYMERASE ALPHA CHAIN
PGVYFTPDPARPGRYIASIIPLPKRGPWIDLEVEPNGVVSMKVNKRKFPLVLLLRVLGYD
QETLARELGAYGELVQGLMDESVFAMRPEEALIRLFTLLRPGDPPKRDKAVAYVYGLIAD
PRRYDLGEAGRYKAEEKLGIRLSGRTLARFEDGEFKDEVFLPTLRYLFALTAGVPGHEVD
D

Coordinates

1smy_C_str_4 (C: 470-539)

Sequence

> 1smy_C_str_4 (C: 470-539) DNA-DIRECTED RNA POLYMERASE ALPHA CHAIN
PYRRVVGGVVTDEVVYMTATEEDRYTIAQANTPLEGNRIAAERVVARRKGEPVIVSPEEV
EFMDVSPKQV

Coordinates

1smy_C_str_5 (C: 540-593, 658-668)

Sequence

> 1smy_C_str_5 (C: 540-593, 658-668) DNA-DIRECTED RNA POLYMERASE ALPHA CHAIN
FSVNTNLIPFLEHDDANRALMGSNMQTQAVPLIRAQAPVVMTGLEERVVRDSLAGPASEN
GFLAL

Coordinates

1smy_C_str_6 (C: 594-657)

Sequence

> 1smy_C_str_6 (C: 594-657) DNA-DIRECTED RNA POLYMERASE ALPHA CHAIN
ALYAEEDGEVAKVDGNRIVVRYEDGRLVEYPLRRFYRSNQGTALDQRPRVVVGQRVRKGD
LLAD

Coordinates

1smy_C_str_7 (C: 669-702, 831-922, 967-1005)

Sequence

> 1smy_C_str_7 (C: 669-702, 831-922, 967-1005) DNA-DIRECTED RNA POLYMERASE ALPHA CHAIN
GQNVLVAIMPFDGYNFEDAIVISEELLKRDFYTSRKLQVGDKLANRHGNKGVVAKILPVE
DMPHLPDGTPVDVILNPLGVPSRMNLGQILETHLGLAGYFLGQRYISPIFDGAKEPEIKE
LLAQAFFLQGKVVLYDGRTGEPIEGPIVVGQMFIMKLYHMVEDKM

Coordinates

1smy_C_str_8 (C: 703-830)

Sequence

> 1smy_C_str_8 (C: 703-830) DNA-DIRECTED RNA POLYMERASE ALPHA CHAIN
IHIERYEIEARDTKLGPERITRDIPHLSEAALRDLDEEGVVRIGAEVKPGDILVGRTSFK
GESEPTPEERLLRSIFGEKARDVKDTSLRVPPGEGGIVVRTVRLRRGDPGVELKPGVREV
VRVYVAQK

Coordinates

1smy_C_str_9 (C: 923-966)

Sequence

> 1smy_C_str_9 (C: 923-966) DNA-DIRECTED RNA POLYMERASE ALPHA CHAIN
EVYFGKRKGEGFGVDKREVEVLRRAEKLGLVTPGKTPEEQLKEL

Coordinates

1smy_C_str_10 (C: 1006-1119)

Sequence

> 1smy_C_str_10 (C: 1006-1119) DNA-DIRECTED RNA POLYMERASE ALPHA CHAIN
HARSTGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGAAHTLQEMLTLKSDDIEGRNA
AYEAIIKGEDVPEPSVPESFRVLVKELQALALDVQTLDEKDNPVDIFEGLASKR

Coordinates

Structural Domains (with extensions added by sequence continuity)

1smy_C_seq_1 (C: 1-134, 338-407)

Sequence

> 1smy_C_seq_1 (C: 1-134, 338-407) DNA-DIRECTED RNA POLYMERASE ALPHA CHAIN
MEIKRFGRIREVIPLPPLTEIQVESYRRALQADVPPEKRENVGIQAAFRETFPIEEEDKG
KGGLVLDFLEYRLGEPPFPQDECREKDLTYQAPLYARLQLIHKDTGLIKEDEVFLGHIPL
MTEDGSFIINGADRELMTDQFRVGLARLARGVRERMLMGSEDSLTPAKLVNSRPLEAAIR
EFFSRSQLSQFKDETNPLSSLRHK

Coordinates

1smy_C_seq_2 (C: 135-143, 325-337, 408-469)

Sequence

> 1smy_C_seq_2 (C: 135-143, 325-337, 408-469) DNA-DIRECTED RNA POLYMERASE ALPHA CHAIN
VIVSQIHRSIDHLGNRRIRTVGRRISALGPGGLTRERAGFDVRDVHRTHYGRICPVETPE
GANIGLITSLAAYARVDELGFIRT

Coordinates

1smy_C_seq_3 (C: 144-324)

Sequence

> 1smy_C_seq_3 (C: 144-324) DNA-DIRECTED RNA POLYMERASE ALPHA CHAIN
PGVYFTPDPARPGRYIASIIPLPKRGPWIDLEVEPNGVVSMKVNKRKFPLVLLLRVLGYD
QETLARELGAYGELVQGLMDESVFAMRPEEALIRLFTLLRPGDPPKRDKAVAYVYGLIAD
PRRYDLGEAGRYKAEEKLGIRLSGRTLARFEDGEFKDEVFLPTLRYLFALTAGVPGHEVD
D

Coordinates

1smy_C_seq_4 (C: 470-539)

Sequence

> 1smy_C_seq_4 (C: 470-539) DNA-DIRECTED RNA POLYMERASE ALPHA CHAIN
PYRRVVGGVVTDEVVYMTATEEDRYTIAQANTPLEGNRIAAERVVARRKGEPVIVSPEEV
EFMDVSPKQV

Coordinates

1smy_C_seq_5 (C: 540-593, 658-668)

Sequence

> 1smy_C_seq_5 (C: 540-593, 658-668) DNA-DIRECTED RNA POLYMERASE ALPHA CHAIN
FSVNTNLIPFLEHDDANRALMGSNMQTQAVPLIRAQAPVVMTGLEERVVRDSLAGPASEN
GFLAL

Coordinates

1smy_C_seq_6 (C: 594-657)

Sequence

> 1smy_C_seq_6 (C: 594-657) DNA-DIRECTED RNA POLYMERASE ALPHA CHAIN
ALYAEEDGEVAKVDGNRIVVRYEDGRLVEYPLRRFYRSNQGTALDQRPRVVVGQRVRKGD
LLAD

Coordinates

1smy_C_seq_7 (C: 669-702, 831-922, 967-1005)

Sequence

> 1smy_C_seq_7 (C: 669-702, 831-922, 967-1005) DNA-DIRECTED RNA POLYMERASE ALPHA CHAIN
GQNVLVAIMPFDGYNFEDAIVISEELLKRDFYTSRKLQVGDKLANRHGNKGVVAKILPVE
DMPHLPDGTPVDVILNPLGVPSRMNLGQILETHLGLAGYFLGQRYISPIFDGAKEPEIKE
LLAQAFFLQGKVVLYDGRTGEPIEGPIVVGQMFIMKLYHMVEDKM

Coordinates

1smy_C_seq_8 (C: 703-830)

Sequence

> 1smy_C_seq_8 (C: 703-830) DNA-DIRECTED RNA POLYMERASE ALPHA CHAIN
IHIERYEIEARDTKLGPERITRDIPHLSEAALRDLDEEGVVRIGAEVKPGDILVGRTSFK
GESEPTPEERLLRSIFGEKARDVKDTSLRVPPGEGGIVVRTVRLRRGDPGVELKPGVREV
VRVYVAQK

Coordinates

1smy_C_seq_9 (C: 923-966)

Sequence

> 1smy_C_seq_9 (C: 923-966) DNA-DIRECTED RNA POLYMERASE ALPHA CHAIN
EVYFGKRKGEGFGVDKREVEVLRRAEKLGLVTPGKTPEEQLKEL

Coordinates

1smy_C_seq_10 (C: 1006-1119)

Sequence

> 1smy_C_seq_10 (C: 1006-1119) DNA-DIRECTED RNA POLYMERASE ALPHA CHAIN
HARSTGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGAAHTLQEMLTLKSDDIEGRNA
AYEAIIKGEDVPEPSVPESFRVLVKELQALALDVQTLDEKDNPVDIFEGLASKR

Coordinates

Extensions (N/C terminal extensions and linkers)

1smy_C_ext_1 (C: 1-18)

Sequence

> 1smy_C_ext_1 (C: 1-18) DNA-DIRECTED RNA POLYMERASE ALPHA CHAIN
MEIKRFGRIREVIPLPPL

Coordinates