1u4b_A

PDB Headers (abridged)

HEADER    TRANSFERASE/DNA                         23-JUL-04   1U4B              
TITLE     EXTENSION OF AN ADENINE-8OXOGUANINE MISMATCH                          
COMPND   2 MOLECULE: DNA POLYMERASE I;                                          
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    G.W.HSU,M.OBER,T.CARELL,L.S.BEESE

Sequence

> 1u4b_A (A:) DNA POLYMERASE I
AAMAFTLADRVTEEMLADKAALVVEVVEENYHDAPIVGIAVVNEHGRFFLRPETALADPQ
FVAWLGDETKKKSMFDSKRAAVALKWKGIELCGVSFDLLLAAYLLDPAQGVDDVAAAAKM
KQYEAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVE
LEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEFNINSPKQLGV
ILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLLKVVR
PDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQ
IELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGI
SDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDI
TSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELILEA
PKEEMERLCRLVPEVMEQAVTLRVPLKVDYHYGSTWYDAK

Coordinates

Link to SCOP

Link to Pfam

Link to Protein Data Bank

Structural Domains (with extensions added by structural compactness)

1u4b_A_str_1 (A: 297-468)

Sequence

> 1u4b_A_str_1 (A: 297-468) DNA POLYMERASE I
AAMAFTLADRVTEEMLADKAALVVEVVEENYHDAPIVGIAVVNEHGRFFLRPETALADPQ
FVAWLGDETKKKSMFDSKRAAVALKWKGIELCGVSFDLLLAAYLLDPAQGVDDVAAAAKM
KQYEAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRN

Coordinates

1u4b_A_str_2 (A: 469-494, 601-625)

Sequence

> 1u4b_A_str_2 (A: 469-494, 601-625) DNA POLYMERASE I
EQDRLLVELEQPLSSILAEMEFAGVKKVHTIFNQALTQTGRLSSTEPNLQN

Coordinates

1u4b_A_str_3 (A: 495-600)

Sequence

> 1u4b_A_str_3 (A: 495-600) DNA POLYMERASE I
VDTKRLEQMGKELAEQLGTVEQRIYELAGQEFNINSPKQLGVILFEKLQLPVLKKTKTGY
STSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLLKVVRPDTK

Coordinates

1u4b_A_str_4 (A: 626-657, 801-876)

Sequence

> 1u4b_A_str_4 (A: 626-657, 801-876) DNA POLYMERASE I
IPIRLEEGRKIRQAFVPSESDWLIFAADYSQIADIIKKAMIDLNARLKEERLQAHLLLQV
HDELILEAPKEEMERLCRLVPEVMEQAVTLRVPLKVDYHYGSTWYDAK

Coordinates

1u4b_A_str_5 (A: 658-667, 749-800)

Sequence

> 1u4b_A_str_5 (A: 658-667, 749-800) DNA POLYMERASE I
ELRVLAHIAEYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQG
SA

Coordinates

1u4b_A_str_6 (A: 668-748)

Sequence

> 1u4b_A_str_6 (A: 668-748) DNA POLYMERASE I
DDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQNLNI
SRKEAAEFIERYFESFPGVKR

Coordinates

Structural Domains (with extensions added by sequence continuity)

1u4b_A_seq_1 (A: 297-468)

Sequence

> 1u4b_A_seq_1 (A: 297-468) DNA POLYMERASE I
AAMAFTLADRVTEEMLADKAALVVEVVEENYHDAPIVGIAVVNEHGRFFLRPETALADPQ
FVAWLGDETKKKSMFDSKRAAVALKWKGIELCGVSFDLLLAAYLLDPAQGVDDVAAAAKM
KQYEAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRN

Coordinates

1u4b_A_seq_2 (A: 469-494, 601-625)

Sequence

> 1u4b_A_seq_2 (A: 469-494, 601-625) DNA POLYMERASE I
EQDRLLVELEQPLSSILAEMEFAGVKKVHTIFNQALTQTGRLSSTEPNLQN

Coordinates

1u4b_A_seq_3 (A: 495-600)

Sequence

> 1u4b_A_seq_3 (A: 495-600) DNA POLYMERASE I
VDTKRLEQMGKELAEQLGTVEQRIYELAGQEFNINSPKQLGVILFEKLQLPVLKKTKTGY
STSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLLKVVRPDTK

Coordinates

1u4b_A_seq_4 (A: 626-657, 801-876)

Sequence

> 1u4b_A_seq_4 (A: 626-657, 801-876) DNA POLYMERASE I
IPIRLEEGRKIRQAFVPSESDWLIFAADYSQIADIIKKAMIDLNARLKEERLQAHLLLQV
HDELILEAPKEEMERLCRLVPEVMEQAVTLRVPLKVDYHYGSTWYDAK

Coordinates

1u4b_A_seq_5 (A: 658-667, 749-800)

Sequence

> 1u4b_A_seq_5 (A: 658-667, 749-800) DNA POLYMERASE I
ELRVLAHIAEYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQG
SA

Coordinates

1u4b_A_seq_6 (A: 668-748)

Sequence

> 1u4b_A_seq_6 (A: 668-748) DNA POLYMERASE I
DDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQNLNI
SRKEAAEFIERYFESFPGVKR

Coordinates