1uf2_A
HEADER VIRUS/VIRAL PROTEIN 23-MAY-03 1UF2
TITLE THE ATOMIC STRUCTURE OF RICE DWARF VIRUS (RDV)
COMPND 2 MOLECULE: CORE PROTEIN P3;
EXPDTA X-RAY DIFFRACTION
AUTHOR A.NAKAGAWA,N.MIYAZAKI,J.TAKA,H.NAITOW,A.OGAWA,Z.FUJIMOTO,
AUTHOR 2 H.MIZUNO,T.HIGASHI,Y.WATANABE,T.OMURA,R.H.CHENG,T.TSUKIHARA
> 1uf2_A (A:) CORE PROTEIN P3
QSVVSRTPIPLSKIGLQDVKKLFDINVIKCGSSLRIVDEPQVTFIVSYAKDIYDKFMCIE
HDSAYEPSLTMHRVRVIYSMLNDYCAKMISEVPYESSFVGELPVKSVTLNKLGDRNMDAL
AEHLLFEHDVVNAQRENRIFYQRKSAPAVPVIFGDDLEPAVRERANLYHRYSVPYHQIEL
ALHALANDLLSIQYCHPTVVYNYLSSRAPNFLRLDDQVSLKLTSAGIGTLMPRPVVQLLD
YDLVYMSPLALNNLASRLLRKISLHLVMQMVTAVQQDLGEVVSVSSNVTNPASACLVRMN
VQGVQTLAVFIAQSMLNPNISYGMISGLTLDCFSNFIYGACLMLFQALIPPSALTARQRL
DINNRFAYFLIKCHATQATTARLVANQVIYPVDAIDQWQSNGRDVLVAIYNNLLPGELVL
TNLIQTYFRGNTAQQAAEILIPADQTSYGANETRALSAPYLFGAPINMLAPDARLSTYKR
DLALPDRSPILITTVEGQNSISIENLRHKTGLIRAMYLNGFVTQPPAWIRNANSNTALLS
RFLDATPNLLGIYEAILANTYANAVNVYCDSVYRADIPIEWKLHQSVDPQDLLFGVFGIV
PQYQILNEAVPDFFAGGEDILILQLIRAVYDTLSNKLGRNPADIFHLEEVFKVIEEIVSV
LVQQKIDVRKYFTESMRSGSFSKPRWDNFLRRPVAQRLPNLYSVIMTQADHVYNYMTQLT
HIIPITDCFYIVKNSGFVDRGSTGPVIASSSVYENVLKVVHTIADFDAANALRLQRRRVD
NTSYTDSLSDMFNGLRSISSSEFVRSVNGRSVFTEGRIDAIKVNMRAKFDLQFITEEGGY
SKPPNVKKLMFSDFLSFLDSHKSDYRPPLLTVPITIGLNNLGETNSNTLRMRSEAIDEYF
SSYVGAQILVPINVVDTRVYTEFSELRNFFTGDVVIRDDPFDVWDGVKATYIPIGVHGVR
LDPNGDQ
Structural Domains (with extensions added by structural compactness)
1uf2_A_str_1
(A: 50-286, 748-772, 965-1016)
> 1uf2_A_str_1 (A: 50-286, 748-772, 965-1016) CORE PROTEIN P3
QSVVSRTPIPLSKIGLQDVKKLFDINVIKCGSSLRIVDEPQVTFIVSYAKDIYDKFMCIE
HDSAYEPSLTMHRVRVIYSMLNDYCAKMISEVPYESSFVGELPVKSVTLNKLGDRNMDAL
AEHLLFEHDVVNAQRENRIFYQRKSAPAVPVIFGDDLEPAVRERANLYHRYSVPYHQIEL
ALHALANDLLSIQYCHPTVVYNYLSSRAPNFLRLDDQVSLKLTSAGIGTLMPRPVVQPNL
YSVIMTQADHVYNYMTQLTHIIDTRVYTEFSELRNFFTGDVVIRDDPFDVWDGVKATYIP
IGVHGVRLDPNGDQ
1uf2_A_str_2
(A: 287-312, 666-747)
> 1uf2_A_str_2 (A: 287-312, 666-747) CORE PROTEIN P3
LLDYDLVYMSPLALNNLASRLLRKISGEDILILQLIRAVYDTLSNKLGRNPADIFHLEEV
FKVIEEIVSVLVQQKIDVRKYFTESMRSGSFSKPRWDNFLRRPVAQRL
1uf2_A_str_3
(A: 313-403, 509-665)
> 1uf2_A_str_3 (A: 313-403, 509-665) CORE PROTEIN P3
LHLVMQMVTAVQQDLGEVVSVSSNVTNPASACLVRMNVQGVQTLAVFIAQSMLNPNISYG
MISGLTLDCFSNFIYGACLMLFQALIPPSALYLFGAPINMLAPDARLSTYKRDLALPDRS
PILITTVEGQNSISIENLRHKTGLIRAMYLNGFVTQPPAWIRNANSNTALLSRFLDATPN
LLGIYEAILANTYANAVNVYCDSVYRADIPIEWKLHQSVDPQDLLFGVFGIVPQYQILNE
AVPDFFAG
1uf2_A_str_4
(A: 404-508)
> 1uf2_A_str_4 (A: 404-508) CORE PROTEIN P3
TARQRLDINNRFAYFLIKCHATQATTARLVANQVIYPVDAIDQWQSNGRDVLVAIYNNLL
PGELVLTNLIQTYFRGNTAQQAAEILIPADQTSYGANETRALSAP
1uf2_A_str_5
(A: 773-964)
> 1uf2_A_str_5 (A: 773-964) CORE PROTEIN P3
PITDCFYIVKNSGFVDRGSTGPVIASSSVYENVLKVVHTIADFDAANALRLQRRRVDNTS
YTDSLSDMFNGLRSISSSEFVRSVNGRSVFTEGRIDAIKVNMRAKFDLQFITEEGGYSKP
PNVKKLMFSDFLSFLDSHKSDYRPPLLTVPITIGLNNLGETNSNTLRMRSEAIDEYFSSY
VGAQILVPINVV
Structural Domains (with extensions added by sequence continuity)
1uf2_A_seq_1
(A: 50-286, 748-772, 965-1016)
> 1uf2_A_seq_1 (A: 50-286, 748-772, 965-1016) CORE PROTEIN P3
QSVVSRTPIPLSKIGLQDVKKLFDINVIKCGSSLRIVDEPQVTFIVSYAKDIYDKFMCIE
HDSAYEPSLTMHRVRVIYSMLNDYCAKMISEVPYESSFVGELPVKSVTLNKLGDRNMDAL
AEHLLFEHDVVNAQRENRIFYQRKSAPAVPVIFGDDLEPAVRERANLYHRYSVPYHQIEL
ALHALANDLLSIQYCHPTVVYNYLSSRAPNFLRLDDQVSLKLTSAGIGTLMPRPVVQPNL
YSVIMTQADHVYNYMTQLTHIIDTRVYTEFSELRNFFTGDVVIRDDPFDVWDGVKATYIP
IGVHGVRLDPNGDQ
1uf2_A_seq_2
(A: 287-312, 666-747)
> 1uf2_A_seq_2 (A: 287-312, 666-747) CORE PROTEIN P3
LLDYDLVYMSPLALNNLASRLLRKISGEDILILQLIRAVYDTLSNKLGRNPADIFHLEEV
FKVIEEIVSVLVQQKIDVRKYFTESMRSGSFSKPRWDNFLRRPVAQRL
1uf2_A_seq_3
(A: 313-403, 509-665)
> 1uf2_A_seq_3 (A: 313-403, 509-665) CORE PROTEIN P3
LHLVMQMVTAVQQDLGEVVSVSSNVTNPASACLVRMNVQGVQTLAVFIAQSMLNPNISYG
MISGLTLDCFSNFIYGACLMLFQALIPPSALYLFGAPINMLAPDARLSTYKRDLALPDRS
PILITTVEGQNSISIENLRHKTGLIRAMYLNGFVTQPPAWIRNANSNTALLSRFLDATPN
LLGIYEAILANTYANAVNVYCDSVYRADIPIEWKLHQSVDPQDLLFGVFGIVPQYQILNE
AVPDFFAG
1uf2_A_seq_4
(A: 404-508)
> 1uf2_A_seq_4 (A: 404-508) CORE PROTEIN P3
TARQRLDINNRFAYFLIKCHATQATTARLVANQVIYPVDAIDQWQSNGRDVLVAIYNNLL
PGELVLTNLIQTYFRGNTAQQAAEILIPADQTSYGANETRALSAP
1uf2_A_seq_5
(A: 773-964)
> 1uf2_A_seq_5 (A: 773-964) CORE PROTEIN P3
PITDCFYIVKNSGFVDRGSTGPVIASSSVYENVLKVVHTIADFDAANALRLQRRRVDNTS
YTDSLSDMFNGLRSISSSEFVRSVNGRSVFTEGRIDAIKVNMRAKFDLQFITEEGGYSKP
PNVKKLMFSDFLSFLDSHKSDYRPPLLTVPITIGLNNLGETNSNTLRMRSEAIDEYFSSY
VGAQILVPINVV