1uf2_A

PDB Headers (abridged)

HEADER    VIRUS/VIRAL PROTEIN                     23-MAY-03   1UF2              
TITLE     THE ATOMIC STRUCTURE OF RICE DWARF VIRUS (RDV)                        
COMPND   2 MOLECULE: CORE PROTEIN P3;                                           
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    A.NAKAGAWA,N.MIYAZAKI,J.TAKA,H.NAITOW,A.OGAWA,Z.FUJIMOTO,             
AUTHOR   2 H.MIZUNO,T.HIGASHI,Y.WATANABE,T.OMURA,R.H.CHENG,T.TSUKIHARA

Sequence

> 1uf2_A (A:) CORE PROTEIN P3
QSVVSRTPIPLSKIGLQDVKKLFDINVIKCGSSLRIVDEPQVTFIVSYAKDIYDKFMCIE
HDSAYEPSLTMHRVRVIYSMLNDYCAKMISEVPYESSFVGELPVKSVTLNKLGDRNMDAL
AEHLLFEHDVVNAQRENRIFYQRKSAPAVPVIFGDDLEPAVRERANLYHRYSVPYHQIEL
ALHALANDLLSIQYCHPTVVYNYLSSRAPNFLRLDDQVSLKLTSAGIGTLMPRPVVQLLD
YDLVYMSPLALNNLASRLLRKISLHLVMQMVTAVQQDLGEVVSVSSNVTNPASACLVRMN
VQGVQTLAVFIAQSMLNPNISYGMISGLTLDCFSNFIYGACLMLFQALIPPSALTARQRL
DINNRFAYFLIKCHATQATTARLVANQVIYPVDAIDQWQSNGRDVLVAIYNNLLPGELVL
TNLIQTYFRGNTAQQAAEILIPADQTSYGANETRALSAPYLFGAPINMLAPDARLSTYKR
DLALPDRSPILITTVEGQNSISIENLRHKTGLIRAMYLNGFVTQPPAWIRNANSNTALLS
RFLDATPNLLGIYEAILANTYANAVNVYCDSVYRADIPIEWKLHQSVDPQDLLFGVFGIV
PQYQILNEAVPDFFAGGEDILILQLIRAVYDTLSNKLGRNPADIFHLEEVFKVIEEIVSV
LVQQKIDVRKYFTESMRSGSFSKPRWDNFLRRPVAQRLPNLYSVIMTQADHVYNYMTQLT
HIIPITDCFYIVKNSGFVDRGSTGPVIASSSVYENVLKVVHTIADFDAANALRLQRRRVD
NTSYTDSLSDMFNGLRSISSSEFVRSVNGRSVFTEGRIDAIKVNMRAKFDLQFITEEGGY
SKPPNVKKLMFSDFLSFLDSHKSDYRPPLLTVPITIGLNNLGETNSNTLRMRSEAIDEYF
SSYVGAQILVPINVVDTRVYTEFSELRNFFTGDVVIRDDPFDVWDGVKATYIPIGVHGVR
LDPNGDQ

Coordinates

Link to SCOP

Link to Pfam

Link to Protein Data Bank

Structural Domains (with extensions added by structural compactness)

1uf2_A_str_1 (A: 50-286, 748-772, 965-1016)

Sequence

> 1uf2_A_str_1 (A: 50-286, 748-772, 965-1016) CORE PROTEIN P3
QSVVSRTPIPLSKIGLQDVKKLFDINVIKCGSSLRIVDEPQVTFIVSYAKDIYDKFMCIE
HDSAYEPSLTMHRVRVIYSMLNDYCAKMISEVPYESSFVGELPVKSVTLNKLGDRNMDAL
AEHLLFEHDVVNAQRENRIFYQRKSAPAVPVIFGDDLEPAVRERANLYHRYSVPYHQIEL
ALHALANDLLSIQYCHPTVVYNYLSSRAPNFLRLDDQVSLKLTSAGIGTLMPRPVVQPNL
YSVIMTQADHVYNYMTQLTHIIDTRVYTEFSELRNFFTGDVVIRDDPFDVWDGVKATYIP
IGVHGVRLDPNGDQ

Coordinates

1uf2_A_str_2 (A: 287-312, 666-747)

Sequence

> 1uf2_A_str_2 (A: 287-312, 666-747) CORE PROTEIN P3
LLDYDLVYMSPLALNNLASRLLRKISGEDILILQLIRAVYDTLSNKLGRNPADIFHLEEV
FKVIEEIVSVLVQQKIDVRKYFTESMRSGSFSKPRWDNFLRRPVAQRL

Coordinates

1uf2_A_str_3 (A: 313-403, 509-665)

Sequence

> 1uf2_A_str_3 (A: 313-403, 509-665) CORE PROTEIN P3
LHLVMQMVTAVQQDLGEVVSVSSNVTNPASACLVRMNVQGVQTLAVFIAQSMLNPNISYG
MISGLTLDCFSNFIYGACLMLFQALIPPSALYLFGAPINMLAPDARLSTYKRDLALPDRS
PILITTVEGQNSISIENLRHKTGLIRAMYLNGFVTQPPAWIRNANSNTALLSRFLDATPN
LLGIYEAILANTYANAVNVYCDSVYRADIPIEWKLHQSVDPQDLLFGVFGIVPQYQILNE
AVPDFFAG

Coordinates

1uf2_A_str_4 (A: 404-508)

Sequence

> 1uf2_A_str_4 (A: 404-508) CORE PROTEIN P3
TARQRLDINNRFAYFLIKCHATQATTARLVANQVIYPVDAIDQWQSNGRDVLVAIYNNLL
PGELVLTNLIQTYFRGNTAQQAAEILIPADQTSYGANETRALSAP

Coordinates

1uf2_A_str_5 (A: 773-964)

Sequence

> 1uf2_A_str_5 (A: 773-964) CORE PROTEIN P3
PITDCFYIVKNSGFVDRGSTGPVIASSSVYENVLKVVHTIADFDAANALRLQRRRVDNTS
YTDSLSDMFNGLRSISSSEFVRSVNGRSVFTEGRIDAIKVNMRAKFDLQFITEEGGYSKP
PNVKKLMFSDFLSFLDSHKSDYRPPLLTVPITIGLNNLGETNSNTLRMRSEAIDEYFSSY
VGAQILVPINVV

Coordinates

Structural Domains (with extensions added by sequence continuity)

1uf2_A_seq_1 (A: 50-286, 748-772, 965-1016)

Sequence

> 1uf2_A_seq_1 (A: 50-286, 748-772, 965-1016) CORE PROTEIN P3
QSVVSRTPIPLSKIGLQDVKKLFDINVIKCGSSLRIVDEPQVTFIVSYAKDIYDKFMCIE
HDSAYEPSLTMHRVRVIYSMLNDYCAKMISEVPYESSFVGELPVKSVTLNKLGDRNMDAL
AEHLLFEHDVVNAQRENRIFYQRKSAPAVPVIFGDDLEPAVRERANLYHRYSVPYHQIEL
ALHALANDLLSIQYCHPTVVYNYLSSRAPNFLRLDDQVSLKLTSAGIGTLMPRPVVQPNL
YSVIMTQADHVYNYMTQLTHIIDTRVYTEFSELRNFFTGDVVIRDDPFDVWDGVKATYIP
IGVHGVRLDPNGDQ

Coordinates

1uf2_A_seq_2 (A: 287-312, 666-747)

Sequence

> 1uf2_A_seq_2 (A: 287-312, 666-747) CORE PROTEIN P3
LLDYDLVYMSPLALNNLASRLLRKISGEDILILQLIRAVYDTLSNKLGRNPADIFHLEEV
FKVIEEIVSVLVQQKIDVRKYFTESMRSGSFSKPRWDNFLRRPVAQRL

Coordinates

1uf2_A_seq_3 (A: 313-403, 509-665)

Sequence

> 1uf2_A_seq_3 (A: 313-403, 509-665) CORE PROTEIN P3
LHLVMQMVTAVQQDLGEVVSVSSNVTNPASACLVRMNVQGVQTLAVFIAQSMLNPNISYG
MISGLTLDCFSNFIYGACLMLFQALIPPSALYLFGAPINMLAPDARLSTYKRDLALPDRS
PILITTVEGQNSISIENLRHKTGLIRAMYLNGFVTQPPAWIRNANSNTALLSRFLDATPN
LLGIYEAILANTYANAVNVYCDSVYRADIPIEWKLHQSVDPQDLLFGVFGIVPQYQILNE
AVPDFFAG

Coordinates

1uf2_A_seq_4 (A: 404-508)

Sequence

> 1uf2_A_seq_4 (A: 404-508) CORE PROTEIN P3
TARQRLDINNRFAYFLIKCHATQATTARLVANQVIYPVDAIDQWQSNGRDVLVAIYNNLL
PGELVLTNLIQTYFRGNTAQQAAEILIPADQTSYGANETRALSAP

Coordinates

1uf2_A_seq_5 (A: 773-964)

Sequence

> 1uf2_A_seq_5 (A: 773-964) CORE PROTEIN P3
PITDCFYIVKNSGFVDRGSTGPVIASSSVYENVLKVVHTIADFDAANALRLQRRRVDNTS
YTDSLSDMFNGLRSISSSEFVRSVNGRSVFTEGRIDAIKVNMRAKFDLQFITEEGGYSKP
PNVKKLMFSDFLSFLDSHKSDYRPPLLTVPITIGLNNLGETNSNTLRMRSEAIDEYFSSY
VGAQILVPINVV

Coordinates