1vqq_A

PDB Headers (abridged)

HEADER    BIOSYNTHETIC PROTEIN                    17-DEC-04   1VQQ              
TITLE     STRUCTURE OF PENICILLIN BINDING PROTEIN 2A FROM METHICILLIN           
TITLE    2 RESISTANT STAPHYLOCOCCUS AUREUS STRAIN 27R AT 1.80 A                 
TITLE    3 RESOLUTION.                                                          
COMPND   2 MOLECULE: PENICILLIN-BINDING PROTEIN MECA, LOW-AFFINITY;             
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    D.LIM,N.C.J.STRYNADKA

Sequence

> 1vqq_A (A:) PENICILLIN-BINDING PROTEIN MECA, LOW-AFFINITY
DKEINNTIDAIEDKNFKQVYKDSSYISKSDNGEVEMTERPIKIYNSLGVKDINIQDRKIK
KVSKNKKRVDAQYKIKTNYGNIDRNVQFNFVKEDGMWKLDWDHSVIIPGMQKDQSIHIEN
LKSERGKILDRNNVELANTGTAYEIGIVPKNVSKKDYKAIAKELSISEDYIKQQMDQNWV
QDDTFVPLKTVKKMDEYLSDFAKKFHLTTNETESRNYPLEKATSHLLGYVGPINSEELKQ
KEYKGYKDDAVIGKKGLEKLYDKKLQHEDGYRVTIVDDSNTIAHTLIEKKKKDGKDIQLT
IDAKVQKSIYNNMKNDYGSGTAIHPQTGELLALVSTPSYDVYPFMYGMSNEEYNKLTEDK
KEPLLNKFQITTSPGSTQKILTAMIGLNNKTLDDKTSYKIDGKGWQKDKSWGGYNVTRYE
VVNGNIDLKQAIESSDNIFFARVALELGSKKFEKGMKKLGVGEDIPSDYPFYNAQISNKN
LDNEILLADSGYGQGEILINPVQILSIYSALENNGNINAPHLLKDTKNKVWKKNIISKEN
INLLTDGMQQVVNKTHKEDIYRSYANLIGKSGTAELKGRQIGWFISYDKDNPNMMMAINV
KDVQDKGMASYNAKISGKVYDELYENGNKKYDIDE

Coordinates

Link to SCOP

Link to Pfam

Link to Protein Data Bank

Structural Domains (with extensions added by structural compactness)

1vqq_A_str_1 (A: 27-138)

Sequence

> 1vqq_A_str_1 (A: 27-138) PENICILLIN-BINDING PROTEIN MECA, LOW-AFFINITY
DKEINNTIDAIEDKNFKQVYKDSSYISKSDNGEVEMTERPIKIYNSLGVKDINIQDRKIK
KVSKNKKRVDAQYKIKTNYGNIDRNVQFNFVKEDGMWKLDWDHSVIIPGMQK

Coordinates

1vqq_A_str_2 (A: 139-167, 238-326)

Sequence

> 1vqq_A_str_2 (A: 139-167, 238-326) PENICILLIN-BINDING PROTEIN MECA, LOW-AFFINITY
DQSIHIENLKSERGKILDRNNVELANTGTTESRNYPLEKATSHLLGYVGPINSEELKQKE
YKGYKDDAVIGKKGLEKLYDKKLQHEDGYRVTIVDDSNTIAHTLIEKKKKDGKDIQL

Coordinates

1vqq_A_str_3 (A: 168-237)

Sequence

> 1vqq_A_str_3 (A: 168-237) PENICILLIN-BINDING PROTEIN MECA, LOW-AFFINITY
AYEIGIVPKNVSKKDYKAIAKELSISEDYIKQQMDQNWVQDDTFVPLKTVKKMDEYLSDF
AKKFHLTTNE

Coordinates

1vqq_A_str_4 (A: 327-398, 527-668)

Sequence

> 1vqq_A_str_4 (A: 327-398, 527-668) PENICILLIN-BINDING PROTEIN MECA, LOW-AFFINITY
TIDAKVQKSIYNNMKNDYGSGTAIHPQTGELLALVSTPSYDVYPFMYGMSNEEYNKLTED
KKEPLLNKFQITNPVQILSIYSALENNGNINAPHLLKDTKNKVWKKNIISKENINLLTDG
MQQVVNKTHKEDIYRSYANLIGKSGTAELKGRQIGWFISYDKDNPNMMMAINVKDVQDKG
MASYNAKISGKVYDELYENGNKKYDIDE

Coordinates

1vqq_A_str_5 (A: 399-526)

Sequence

> 1vqq_A_str_5 (A: 399-526) PENICILLIN-BINDING PROTEIN MECA, LOW-AFFINITY
TSPGSTQKILTAMIGLNNKTLDDKTSYKIDGKGWQKDKSWGGYNVTRYEVVNGNIDLKQA
IESSDNIFFARVALELGSKKFEKGMKKLGVGEDIPSDYPFYNAQISNKNLDNEILLADSG
YGQGEILI

Coordinates

Structural Domains (with extensions added by sequence continuity)

1vqq_A_seq_1 (A: 27-138)

Sequence

> 1vqq_A_seq_1 (A: 27-138) PENICILLIN-BINDING PROTEIN MECA, LOW-AFFINITY
DKEINNTIDAIEDKNFKQVYKDSSYISKSDNGEVEMTERPIKIYNSLGVKDINIQDRKIK
KVSKNKKRVDAQYKIKTNYGNIDRNVQFNFVKEDGMWKLDWDHSVIIPGMQK

Coordinates

1vqq_A_seq_2 (A: 139-167, 238-326)

Sequence

> 1vqq_A_seq_2 (A: 139-167, 238-326) PENICILLIN-BINDING PROTEIN MECA, LOW-AFFINITY
DQSIHIENLKSERGKILDRNNVELANTGTTESRNYPLEKATSHLLGYVGPINSEELKQKE
YKGYKDDAVIGKKGLEKLYDKKLQHEDGYRVTIVDDSNTIAHTLIEKKKKDGKDIQL

Coordinates

1vqq_A_seq_3 (A: 168-237)

Sequence

> 1vqq_A_seq_3 (A: 168-237) PENICILLIN-BINDING PROTEIN MECA, LOW-AFFINITY
AYEIGIVPKNVSKKDYKAIAKELSISEDYIKQQMDQNWVQDDTFVPLKTVKKMDEYLSDF
AKKFHLTTNE

Coordinates

1vqq_A_seq_4 (A: 327-398, 527-668)

Sequence

> 1vqq_A_seq_4 (A: 327-398, 527-668) PENICILLIN-BINDING PROTEIN MECA, LOW-AFFINITY
TIDAKVQKSIYNNMKNDYGSGTAIHPQTGELLALVSTPSYDVYPFMYGMSNEEYNKLTED
KKEPLLNKFQITNPVQILSIYSALENNGNINAPHLLKDTKNKVWKKNIISKENINLLTDG
MQQVVNKTHKEDIYRSYANLIGKSGTAELKGRQIGWFISYDKDNPNMMMAINVKDVQDKG
MASYNAKISGKVYDELYENGNKKYDIDE

Coordinates

1vqq_A_seq_5 (A: 399-526)

Sequence

> 1vqq_A_seq_5 (A: 399-526) PENICILLIN-BINDING PROTEIN MECA, LOW-AFFINITY
TSPGSTQKILTAMIGLNNKTLDDKTSYKIDGKGWQKDKSWGGYNVTRYEVVNGNIDLKQA
IESSDNIFFARVALELGSKKFEKGMKKLGVGEDIPSDYPFYNAQISNKNLDNEILLADSG
YGQGEILI

Coordinates

Extensions (N/C terminal extensions and linkers)

1vqq_A_ext_1 (A: 362-393)

Sequence

> 1vqq_A_ext_1 (A: 362-393) PENICILLIN-BINDING PROTEIN MECA, LOW-AFFINITY
STPSYDVYPFMYGMSNEEYNKLTEDKKEPLLN

Coordinates

1vqq_A_ext_2 (A: 490-501)

Sequence

> 1vqq_A_ext_2 (A: 490-501) PENICILLIN-BINDING PROTEIN MECA, LOW-AFFINITY
EDIPSDYPFYNA

Coordinates

1vqq_A_ext_3 (A: 550-553)

Sequence

> 1vqq_A_ext_3 (A: 550-553) PENICILLIN-BINDING PROTEIN MECA, LOW-AFFINITY
LKDT

Coordinates

Composite domains

1vqq_A_cm_1 (A: 139-167, 238-326, 362-393, 550-553)

Sequence

> 1vqq_A_cm_1 (A: 139-167, 238-326, 362-393, 550-553) PENICILLIN-BINDING PROTEIN MECA, LOW-AFFINITY
DQSIHIENLKSERGKILDRNNVELANTGTTESRNYPLEKATSHLLGYVGPINSEELKQKE
YKGYKDDAVIGKKGLEKLYDKKLQHEDGYRVTIVDDSNTIAHTLIEKKKKDGKDIQLSTP
SYDVYPFMYGMSNEEYNKLTEDKKEPLLNLKDT

Coordinates

1vqq_A_cm_2 (A: 327-361, 394-398, 490-501, 527-549, 554-668)

Sequence

> 1vqq_A_cm_2 (A: 327-361, 394-398, 490-501, 527-549, 554-668) PENICILLIN-BINDING PROTEIN MECA, LOW-AFFINITY
TIDAKVQKSIYNNMKNDYGSGTAIHPQTGELLALVKFQITEDIPSDYPFYNANPVQILSI
YSALENNGNINAPHLKNKVWKKNIISKENINLLTDGMQQVVNKTHKEDIYRSYANLIGKS
GTAELKGRQIGWFISYDKDNPNMMMAINVKDVQDKGMASYNAKISGKVYDELYENGNKKY
DIDE

Coordinates