O35973 | Period circadian protein homolog 1   proviz   swissmodel

*Experimental: mutation (blue); functional region (cyan); located in the long functional sequence (lightblue)
*NES patterns: region with experimental evidence (red-orange-yellow); false positive region (gray)


# candidates id start# sequence secondary class multi-pattern diso spotd iup loc_DISO loc_CDD beta
1 fp_D O35973 134 TQKELMTALRELKLRL                  HHHHHHHHHHHHHHCC c1a-4 multi-selected 0.402 0.65 0.6 DISO 0.0
2 fp_D O35973 134 TQKELMTALRELKLRL                  HHHHHHHHHHHHHHCC c1d-AT-4 multi 0.402 0.65 0.6 DISO 0.0
3 fp_D O35973 135 QKELMTALRELKLRL                 HHHHHHHHHHHHHCC c1b-4 multi 0.388 0.646 0.599 DISO 0.0
4 fp_D O35973 136 KELMTALRELKLRL                HHHHHHHHHHHHCC c2-AT-4 multi 0.379 0.643 0.594 DISO 0.0
5 fp_D O35973 161 TLATLQYALACVKQ                HHHHHHHHHHHHHH c3-4 multi-selected 0.341 0.572 0.26 DISO 0.0
6 fp_D O35973 164 TLQYALACVKQVQA                HHHHHHHHHHHHHH c3-AT multi 0.368 0.536 0.215 DISO 0.0
7 fp_beta_D O35973 220 FSVAVSFLTGRIVYISE                   EEEEEEECCCCEEEECC c1c-AT-4 multi 0.052 0.017 0.109 boundary 0.5
8 fp_D O35973 223 AVSFLTGRIVYISE                EEEECCCCEEEECC c3-4 multi-selected 0.051 0.018 0.09 boundary 0.429
9 fp_D O35973 230 RIVYISEQAGVLLR                CEEEECCCHHHCCC c3-AT uniq 0.1 0.029 0.08 boundary 0.286
10 fp_beta_D O35973 314 QPFRLTPYVTKIRVSD                  EEEEEEEEEEEEECCC c1a-4 multi-selected 0.079 0.026 0.306 boundary 1.0
11 fp_beta_D O35973 315 PFRLTPYVTKIRVSD                 EEEEEEEEEEEECCC c1b-AT-5 multi 0.082 0.027 0.291 boundary 1.0
12 fp_D O35973 404 LMLAIHKKILQLAG                HHHHHHHHHHHCCC c3-4 uniq 0.198 0.047 0.198 boundary MID|PAS_3; 0.0
13 cand_D O35973 485 DIQELSEQIHRLLLQP ++++++++*++*+*   HHHHHHHHHHHHHCCC c1a-5 uniq 0.369 0.465 0.461 DISO boundary|PAS_3; 0.0
14 fp_D O35973 541 PAPVTFQQICKDVHLVK                   CCCCCCCCCCCCCCCCC c1c-AT-4 multi 0.795 0.864 0.458 DISO 0.0
15 fp_D O35973 542 APVTFQQICKDVHLVK                  CCCCCCCCCCCCCCCC c1d-4 multi 0.787 0.859 0.444 DISO 0.0
16 fp_D O35973 542 APVTFQQICKDVHLVK                  CCCCCCCCCCCCCCCC c1aR-5 multi-selected 0.787 0.859 0.444 DISO 0.0
17 fp_D O35973 545 TFQQICKDVHLVKH                CCCCCCCCCCCCCC c3-4 multi-selected 0.776 0.843 0.395 DISO 0.0
18 fp_D O35973 627 QINCLDSILRYLES                CCCCHHHHHHHHHC c3-4 uniq 0.371 0.785 0.186 DISO 0.0
19 fp_D O35973 704 SPLALANKAESVVSVTS                   CCCCCCCCCCCCCCCCC c1c-AT-4 uniq 0.881 0.73 0.401 DISO 0.0
20 fp_D O35973 772 AYRPVGLTKAVLSLHT                  CCCCCCCHHHHHHCCC c1d-AT-4 uniq 0.774 0.713 0.623 DISO 0.0
21 fp_D O35973 909 FPSPLVTPMVALVLPN                  CCCCCCCCEEECCCCC c1a-4 multi-selected 0.212 0.218 0.472 DISO 0.429
22 fp_D O35973 910 PSPLVTPMVALVLPN                 CCCCCCCEEECCCCC c1b-4 multi 0.184 0.212 0.459 DISO 0.429
23 fp_D O35973 911 SPLVTPMVALVLPN                CCCCCCEEECCCCC c2-AT-4 multi 0.161 0.207 0.448 DISO 0.429
24 fp_D O35973 977 CSSPLQLNLLQLEE                CCCCCCCCCCCCCC c2-4 uniq 0.971 0.842 0.667 DISO 0.0
25 fp_D O35973 1128 PIWLLMANADQRVMMTY                   CCCHHCCCCCCCCEEEE c1c-AT-5 multi-selected 0.054 0.09 0.362 boundary MID|Period_C; 0.0
26 fp_D O35973 1129 IWLLMANADQRVMMTY                  CCHHCCCCCCCCEEEE c1d-AT-4 multi 0.048 0.086 0.368 boundary MID|Period_C; 0.0
27 fp_D O35973 1214 SDDPLFSELDGLGLEP                  CCCCCCCCCCCCCCCC c1a-4 multi-selected 0.938 0.848 0.771 DISO boundary|Period_C; 0.0
28 fp_D O35973 1215 DDPLFSELDGLGLEP                 CCCCCCCCCCCCCCC c1b-4 multi 0.944 0.849 0.773 DISO boundary|Period_C; 0.0

*candidates: NES candidates and false positives annotated with "cand" and "fp", respectively;
                if the segment is located in the disordered or boundary region, flagged with "D"; if the segment is located in the ordered region, flagged with "O";
                if the segment's beta-strand content is over 0.5, flagged with "beta".
*sequence: Hydrophobic positions are colored in red. The positions with the experimental evidence is marked with '*' (mutation) and '+' (functional sequence in NESdb or sites in validNES).
                The positions with '.' are for the region annotated in the long (more than 25 residues) functional sequence or site.
*multi-pattern: the consensus pattern is unique or multiple within the region (if the start# difference is less than 5, the segments are considered to be the same region)
*diso: average DISOPRED3-predicted disorder propensity for the segment
*spotd: average SPOT-Disorder-predicted disorder propensity for the segment
*iup: average IUPRED2A-predicted disorder propensity for the segment
*loc_DISO: location of the segment with respect to the ordered/disordered regions
*loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
*beta: beta-strand content in the middle of the segment