P03116 | Replication protein E1   proviz   swissmodel

*Experimental: mutation (blue); functional region (cyan); located in the long functional sequence (lightblue)
*NES patterns: region with experimental evidence (red-orange-yellow); false positive region (gray)


# candidates id start# sequence secondary class multi-pattern diso spotd iup loc_DISO loc_CDD beta
1 fp_D P03116 155 KSKNATVFKLGLFK                HCCCHHHHHHHHHH c2-AT-4 multi 0.01 0.069 0.054 boundary MID|PHA02774; 0.0
2 fp_D P03116 158 NATVFKLGLFKSLFLCS                   CHHHHHHHHHHHHHCCC c1c-4 multi-selected 0.01 0.053 0.033 boundary MID|PHA02774; 0.0
3 fp_D P03116 160 TVFKLGLFKSLFLCSF                  HHHHHHHHHHHHCCCC c1aR-4 multi-selected 0.01 0.048 0.027 boundary MID|PHA02774; 0.0
4 fp_D P03116 160 TVFKLGLFKSLFLCS                 HHHHHHHHHHHHCCC c1b-5 multi 0.01 0.048 0.027 boundary MID|PHA02774; 0.0
5 fp_D P03116 171 FLCSFHDITRLFKN                HCCCCCCCCCCCCC c3-AT uniq 0.016 0.062 0.086 boundary MID|PHA02774; 0.0
6 fp_O P03116 191 QWVLAVFGLAEVFFEA                  CCEEEECCCCHHHHHH c1a-AT-4 multi 0.009 0.014 0.038 ORD MID|PHA02774; 0.286
7 fp_O P03116 192 WVLAVFGLAEVFFEAS                  CEEEECCCCHHHHHHH c1aR-4 multi-selected 0.009 0.013 0.033 ORD MID|PHA02774; 0.143
8 fp_O P03116 192 WVLAVFGLAEVFFEA                 CEEEECCCCHHHHHH c1b-5 multi 0.009 0.014 0.034 ORD MID|PHA02774; 0.143
9 fp_O P03116 192 WVLAVFGLAEVFFE                CEEEECCCCHHHHH c3-AT multi 0.009 0.014 0.035 ORD MID|PHA02774; 0.286
10 fp_O P03116 193 VLAVFGLAEVFFEA                EEEECCCCHHHHHH c2-5 multi-selected 0.009 0.013 0.029 ORD MID|PHA02774; 0.143
11 fp_O P03116 196 VFGLAEVFFEASFELLK                   ECCCCHHHHHHHHHHHH c1c-AT-5 multi 0.009 0.012 0.019 ORD MID|PHA02774; 0.0
12 fp_beta_O P03116 225 HEGGTCAVYLICFNT                 CCCCEEEEEEEECCC c1b-AT-4 uniq 0.01 0.013 0.069 ORD MID|PHA02774; 1.0
13 fp_O P03116 242 SRETVRNLMANTLNVRE                   CHHHHHHHHHHCCCCCC c1c-4 multi-selected 0.01 0.024 0.187 ORD MID|PHA02774; 0.0
14 fp_O P03116 245 TVRNLMANTLNVRE                HHHHHHHHCCCCCC c2-AT-5 multi 0.01 0.022 0.212 ORD MID|PHA02774; 0.0
15 fp_O P03116 245 TVRNLMANTLNVRE                HHHHHHHHCCCCCC c3-AT multi 0.01 0.022 0.212 ORD MID|PHA02774; 0.0
16 fp_O P03116 267 KIRGLSAALFWFKS                CCCCCHHHHHHHHH c2-AT-5 uniq 0.015 0.022 0.04 ORD MID|PHA02774; 0.0
17 fp_D P03116 302 LNESLQTEKFDFGT                HCCCCCCCCEEEHH c2-AT-4 uniq 0.015 0.102 0.192 boundary MID|PHA02774; 0.143
18 fp_O P03116 365 VRHYLRAETQALSMPA                  HHHHHHHHHHCCCHHH c1a-AT-4 uniq 0.019 0.064 0.106 ORD MID|PHA02774; 0.0
19 cand_O P03116 405 QNIELITFINALKLWL    +++++*++*++   CCCCHHHHHHHHHHHH c1aR-4 multi-selected 0.01 0.009 0.013 ORD MID|PHA02774; 0.0
20 cand_O P03116 405 QNIELITFINALKLWL    +++++*++*++   CCCCHHHHHHHHHHHH c1a-4 multi-selected 0.01 0.009 0.013 ORD MID|PHA02774; 0.0
21 cand_O P03116 405 QNIELITFINALKLWL    +++++*++*++   CCCCHHHHHHHHHHHH c1d-4 multi 0.01 0.009 0.013 ORD MID|PHA02774; 0.0
22 cand_O P03116 406 NIELITFINALKLWL   +++++*++*++   CCCHHHHHHHHHHHH c1b-5 multi 0.01 0.009 0.013 ORD MID|PHA02774; 0.0
23 cand_O P03116 407 IELITFINALKLWL  +++++*++*++   CCHHHHHHHHHHHH c2-AT-4 multi 0.01 0.009 0.014 ORD MID|PHA02774; 0.0
24 cand_O P03116 408 ELITFINALKLWLKGIP +++++*++*++       CHHHHHHHHHHHHHCCC c1cR-5 multi 0.01 0.011 0.015 ORD MID|PHA02774; 0.0
25 cand_O P03116 409 LITFINALKLWLKG ++++*++*++     HHHHHHHHHHHHHC c2-AT-5 multi 0.01 0.009 0.014 ORD MID|PHA02774; 0.0
26 fp_O P03116 412 FINALKLWLKGIPK +*++*++        HHHHHHHHHHCCCC c3-4 multi-selected 0.01 0.013 0.018 ORD MID|PHA02774; 0.0
27 fp_O P03116 446 LIHFLGGSVLSFAN                HHHHHCCCEEECCC c3-4 uniq 0.01 0.012 0.024 ORD MID|PHA02774; 0.286
28 fp_beta_O P03116 514 KAPPLLVTSNIDVQA                 CCCCEEEECCCCCCC c1b-AT-4 multi 0.02 0.023 0.209 ORD MID|PHA02774; 0.571
29 fp_beta_O P03116 515 APPLLVTSNIDVQA                CCCEEEECCCCCCC c2-AT-4 multi-selected 0.018 0.022 0.205 ORD MID|PHA02774; 0.571
30 fp_beta_O P03116 531 RYLYLHSRVQTFRFEQ                  CCCCCCCEEEEEECCC c1a-4 uniq 0.012 0.018 0.191 ORD MID|PHA02774; 0.571
31 fp_D P03116 567 FFVRLWGRLDLIDE                HHHHHHHCCCCCCC c3-4 uniq 0.184 0.165 0.153 boundary MID|PHA02774; 0.0

*candidates: NES candidates and false positives annotated with "cand" and "fp", respectively;
                if the segment is located in the disordered or boundary region, flagged with "D"; if the segment is located in the ordered region, flagged with "O";
                if the segment's beta-strand content is over 0.5, flagged with "beta".
*sequence: Hydrophobic positions are colored in red. The positions with the experimental evidence is marked with '*' (mutation) and '+' (functional sequence in NESdb or sites in validNES).
                The positions with '.' are for the region annotated in the long (more than 25 residues) functional sequence or site.
*multi-pattern: the consensus pattern is unique or multiple within the region (if the start# difference is less than 5, the segments are considered to be the same region)
*diso: average DISOPRED3-predicted disorder propensity for the segment
*spotd: average SPOT-Disorder-predicted disorder propensity for the segment
*iup: average IUPRED2A-predicted disorder propensity for the segment
*loc_DISO: location of the segment with respect to the ordered/disordered regions
*loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
*beta: beta-strand content in the middle of the segment