P03322 | Gag-Pro polyprotein p10   proviz   swissmodel

*Experimental: mutation (blue); functional region (cyan); located in the long functional sequence (lightblue)
*NES patterns: region with experimental evidence (red-orange-yellow); false positive region (gray)


# candidates id start# sequence secondary class multi-pattern diso spotd iup loc_DISO loc_CDD beta
1 fp_D P03322 272 SPITMAEVEALMSSPL                  CCHHHHHHHHHHCCCC c1aR-4 uniq 0.117 0.07 0.467 boundary boundary|Gag_p24 superfamily; 0.0
2 fp_D P03322 284 SSPLLPHDVTNLMRVIL                   CCCCCHHHHHHHHHHHC c1c-4 multi-selected 0.128 0.053 0.339 boundary MID|Gag_p24 superfamily; 0.0
3 fp_D P03322 288 LPHDVTNLMRVILGP                 CHHHHHHHHHHHCCC c1b-4 multi 0.089 0.048 0.283 boundary MID|Gag_p24 superfamily; 0.0
4 fp_D P03322 289 PHDVTNLMRVILGP                HHHHHHHHHHHCCC c2-AT-4 multi 0.079 0.047 0.274 boundary MID|Gag_p24 superfamily; 0.0
5 fp_D P03322 341 NLNRLKGLADGMVG                CCCCCCCCCCCCCC c3-AT uniq 0.58 0.55 0.522 DISO MID|Gag_p24 superfamily; 0.0
6 fp_D P03322 368 LVAITASALQAFRE                CCHHHHHHHHHHHH c3-AT uniq 0.01 0.13 0.201 boundary MID|Gag_p24 superfamily; 0.0
7 fp_D P03322 402 SFVDFANRLIKAVEGSD                   CHHHHHHHHHHHHHCCC c1cR-4 multi-selected 0.039 0.057 0.348 boundary MID|Gag_p24 superfamily; 0.0
8 fp_D P03322 403 FVDFANRLIKAVEG                HHHHHHHHHHHHHC c3-AT multi-selected 0.032 0.046 0.34 boundary MID|Gag_p24 superfamily; 0.0
9 fp_D P03322 633 VMEAANPQIHGIGG                CCCCCCCCCCCCCC c3-AT uniq 0.046 0.099 0.503 boundary MID|RVP; 0.0
10 fp_D P03322 690 CLQGLGLRLTNLXX                HHHHHCCCCCCC c3-4-Ct uniq 0.123 0.237 0.098 boundary boundary|RVP; 0.0

*candidates: NES candidates and false positives annotated with "cand" and "fp", respectively;
                if the segment is located in the disordered or boundary region, flagged with "D"; if the segment is located in the ordered region, flagged with "O";
                if the segment's beta-strand content is over 0.5, flagged with "beta".
*sequence: Hydrophobic positions are colored in red. The positions with the experimental evidence is marked with '*' (mutation) and '+' (functional sequence in NESdb or sites in validNES).
                The positions with '.' are for the region annotated in the long (more than 25 residues) functional sequence or site.
*multi-pattern: the consensus pattern is unique or multiple within the region (if the start# difference is less than 5, the segments are considered to be the same region)
*diso: average DISOPRED3-predicted disorder propensity for the segment
*spotd: average SPOT-Disorder-predicted disorder propensity for the segment
*iup: average IUPRED2A-predicted disorder propensity for the segment
*loc_DISO: location of the segment with respect to the ordered/disordered regions
*loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
*beta: beta-strand content in the middle of the segment