P0C796 | Nucleoprotein   proviz   swissmodel

*Experimental: mutation (blue); functional region (cyan); located in the long functional sequence (lightblue)
*NES patterns: region with experimental evidence (red-orange-yellow); false positive region (gray)


# candidates id start# sequence secondary class multi-pattern diso spotd iup loc_DISO loc_CDD beta
1 fp_D P0C796 68 MFHTVTPSLVFLCLLI                  CCCCCCCCHHHHHHHH c1a-5 multi-selected 0.019 0.052 0.082 boundary MID|BDV_P40 superfamily; 0.0
2 fp_D P0C796 69 FHTVTPSLVFLCLLI                 CCCCCCCHHHHHHHH c1b-AT-4 multi 0.017 0.048 0.076 boundary MID|BDV_P40 superfamily; 0.0
3 fp_D P0C796 69 FHTVTPSLVFLCLLIPG                   CCCCCCCHHHHHHHHHH c1c-AT-4 multi 0.016 0.046 0.071 boundary MID|BDV_P40 superfamily; 0.0
4 fp_D P0C796 72 VTPSLVFLCLLIPG                CCCCHHHHHHHHHH c2-4 multi 0.012 0.038 0.056 boundary MID|BDV_P40 superfamily; 0.0
5 fp_D P0C796 74 PSLVFLCLLIPGLHAAF                   CCHHHHHHHHHHHHHHH c1cR-4 multi 0.01 0.033 0.059 boundary MID|BDV_P40 superfamily; 0.0
6 fp_D P0C796 75 SLVFLCLLIPGLHAAF                  CHHHHHHHHHHHHHHH c1aR-4 multi 0.01 0.031 0.057 boundary MID|BDV_P40 superfamily; 0.0
7 cand_D P0C796 120 GEKTTQRDLTELEISS         *++*+*++ CCCCCCCCCHHHHHHH c1a-AT-4 uniq 0.104 0.126 0.255 boundary MID|BDV_P40 superfamily; 0.0
8 fp_O P0C796 204 GSFVLSLLTTDFESPG                  EEEEEECCCCCCCCCH c1aR-4 uniq 0.023 0.063 0.1 ORD MID|BDV_P40 superfamily; 0.286
9 fp_O P0C796 241 IKEYLAECMDATLTIPV                   HHHHHHHHHHHHCCHHH c1c-4 multi-selected 0.01 0.026 0.098 ORD MID|BDV_P40 superfamily; 0.0
10 fp_O P0C796 242 KEYLAECMDATLTIPV                  HHHHHHHHHHHCCHHH c1d-AT-4 multi 0.01 0.026 0.097 ORD MID|BDV_P40 superfamily; 0.0
11 fp_O P0C796 254 TIPVVAYEIRDFLE                CHHHHHHHHHHHHH c3-4 multi-selected 0.012 0.026 0.082 ORD MID|BDV_P40 superfamily; 0.0
12 fp_O P0C796 254 TIPVVAYEIRDFLEVSA                   CHHHHHHHHHHHHHHHH c1c-5 multi-selected 0.017 0.028 0.093 ORD MID|BDV_P40 superfamily; 0.0
13 fp_O P0C796 255 IPVVAYEIRDFLEVSA                  HHHHHHHHHHHHHHHH c1d-AT-4 multi 0.017 0.028 0.094 ORD MID|BDV_P40 superfamily; 0.0
14 fp_D P0C796 349 DGAELSGEISAIMKMIG                   CCCCCCHHHHHHHHHHC c1c-4 multi-selected 0.161 0.219 0.285 DISO boundary|BDV_P40 superfamily; 0.0
15 fp_D P0C796 353 LSGEISAIMKMIGVTG                  CCHHHHHHHHHHCCCC c1a-4 multi-selected 0.131 0.222 0.223 DISO boundary|BDV_P40 superfamily; 0.0
16 fp_D P0C796 353 LSGEISAIMKMIGVTG                  CCHHHHHHHHHHCCCC c1d-4 multi 0.131 0.222 0.223 DISO boundary|BDV_P40 superfamily; 0.0
17 fp_D P0C796 355 GEISAIMKMIGVTG                HHHHHHHHHHCCCC c2-AT-4 multi 0.123 0.228 0.211 DISO boundary|BDV_P40 superfamily; 0.0

*candidates: NES candidates and false positives annotated with "cand" and "fp", respectively;
                if the segment is located in the disordered or boundary region, flagged with "D"; if the segment is located in the ordered region, flagged with "O";
                if the segment's beta-strand content is over 0.5, flagged with "beta".
*sequence: Hydrophobic positions are colored in red. The positions with the experimental evidence is marked with '*' (mutation) and '+' (functional sequence in NESdb or sites in validNES).
                The positions with '.' are for the region annotated in the long (more than 25 residues) functional sequence or site.
*multi-pattern: the consensus pattern is unique or multiple within the region (if the start# difference is less than 5, the segments are considered to be the same region)
*diso: average DISOPRED3-predicted disorder propensity for the segment
*spotd: average SPOT-Disorder-predicted disorder propensity for the segment
*iup: average IUPRED2A-predicted disorder propensity for the segment
*loc_DISO: location of the segment with respect to the ordered/disordered regions
*loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
*beta: beta-strand content in the middle of the segment