P0CA03 | Polyprotein pp220 (p37)   proviz   swissmodel

*Experimental: mutation (blue); functional region (cyan); located in the long functional sequence (lightblue)
*NES patterns: region with experimental evidence (red-orange-yellow); false positive region (gray)


# candidates id start# sequence secondary class multi-pattern diso spotd iup loc_DISO loc_CDD beta
1 fp_D P0CA03 5 EELGLSKAARSQVDLNQ ++++++            HHCCCCHHHHHHCCHHH c1c-AT-4 uniq 0.347 0.392 0.224 boundary 0.0
2 fp_D P0CA03 98 VDWKAAVSAIELEY                CCHHHHHHHHHHHH c2-AT-4 uniq 0.021 0.097 0.187 boundary 0.0
3 fp_D P0CA03 113 VKRRFYRALEGLDLYL                  HHHHHHHHHCCHHHHH c1a-4 multi-selected 0.01 0.045 0.075 boundary 0.0
4 fp_D P0CA03 113 VKRRFYRALEGLDLYL                  HHHHHHHHHCCHHHHH c1d-AT-4 multi 0.01 0.045 0.075 boundary 0.0
5 fp_O P0CA03 120 ALEGLDLYLKNITK                HHCCHHHHHHHHHH c3-4 multi-selected 0.01 0.045 0.087 ORD 0.0
6 fp_O P0CA03 124 LDLYLKNITKTFVNNI                + HHHHHHHHHHHHHCCC c1aR-4 multi-selected 0.01 0.051 0.126 ORD 0.0
7 cand_O P0CA03 140 DSIQTVQQMLDGVRIIG +++++++++         CHHHHHHHHHHCEEEEE c1c-AT-4 multi 0.01 0.048 0.191 ORD 0.0
8 fp_O P0CA03 141 SIQTVQQMLDGVRIIG ++++++++         HHHHHHHHHHCEEEEE c1a-5 multi-selected 0.01 0.046 0.186 ORD 0.0
9 cand_O P0CA03 141 SIQTVQQMLDGVRIIG ++++++++         HHHHHHHHHHCEEEEE c1d-5 multi 0.01 0.046 0.186 ORD 0.0
10 fp_O P0CA03 144 TVQQMLDGVRIIGR +++++          HHHHHHHCEEEEEE c3-4 multi 0.01 0.042 0.17 ORD 0.286
11 fp_D P0CA03 232 NFQALKNIINAFAR                CHHHHHHHHHHHHH c3-4 multi-selected 0.01 0.047 0.086 boundary 0.0
12 fp_D P0CA03 235 ALKNIINAFARIGD                HHHHHHHHHHHHHH c3-4 multi-selected 0.01 0.044 0.102 boundary 0.0
13 fp_D P0CA03 238 NIINAFARIGDMLG                HHHHHHHHHHHCCC c3-AT multi 0.011 0.051 0.123 boundary 0.0
14 fp_D P0CA03 270 LLEYIQHSALSVGLKN                  HHHHHHHHHHHHCCCC c1a-AT-5 uniq 0.018 0.077 0.12 boundary 0.0
15 fp_beta_D P0CA03 305 AAQRVYLSTVRVND                HHHHEEEEEEEECC c2-4 uniq 0.024 0.085 0.202 boundary 0.857
16 fp_D P0CA03 322 TRWETEDVFFTFMLKS                  CCCCCCHHHHHHHHHH c1a-AT-4 multi 0.014 0.039 0.049 __ 0.0
17 fp_D P0CA03 322 TRWETEDVFFTFMLKS                  CCCCCCHHHHHHHHHH c1d-AT-4 multi 0.014 0.039 0.049 __ 0.0
18 fp_O P0CA03 327 EDVFFTFMLKSMAAKI                  CHHHHHHHHHHHHHHH c1aR-4 multi-selected 0.015 0.023 0.026 ORD 0.0
19 fp_O P0CA03 330 FFTFMLKSMAAKIFIVL                   HHHHHHHHHHHHHHHHH c1c-5 multi-selected 0.015 0.018 0.018 ORD 0.0
20 fp_D P0CA03 331 FTFMLKSMAAKIFIVLG                   HHHHHHHHHHHHHHHHH c1c-AT-4 multi 0.015 0.018 0.017 boundary 0.0
21 fp_O P0CA03 331 FTFMLKSMAAKIFIVL                  HHHHHHHHHHHHHHHH c1aR-5 multi-selected 0.016 0.018 0.016 ORD 0.0
22 fp_O P0CA03 331 FTFMLKSMAAKIFIVL                  HHHHHHHHHHHHHHHH c1a-AT-4 multi 0.016 0.018 0.016 ORD 0.0
23 fp_O P0CA03 331 FTFMLKSMAAKIFIVL                  HHHHHHHHHHHHHHHH c1d-4 multi 0.016 0.018 0.016 ORD 0.0
24 fp_D P0CA03 334 MLKSMAAKIFIVLGIYD                   HHHHHHHHHHHHHHCCC c1c-5 multi-selected 0.015 0.017 0.013 boundary 0.0
25 fp_D P0CA03 334 MLKSMAAKIFIVLG                HHHHHHHHHHHHHH c2-AT-5 multi 0.016 0.017 0.012 boundary 0.0
26 fp_D P0CA03 334 MLKSMAAKIFIVLG                HHHHHHHHHHHHHH c3-4 multi-selected 0.016 0.017 0.012 boundary 0.0
27 fp_D P0CA03 335 LKSMAAKIFIVLGIYD                  HHHHHHHHHHHHHCCC c1a-AT-4 multi 0.016 0.017 0.013 boundary 0.0
28 fp_D P0CA03 335 LKSMAAKIFIVLGIYD                  HHHHHHHHHHHHHCCC c1d-AT-4 multi 0.016 0.017 0.013 boundary 0.0
29 fp_D P0CA03 336 KSMAAKIFIVLGIYD                 HHHHHHHHHHHHCCC c1b-AT-4 multi 0.015 0.017 0.013 boundary 0.0
30 fp_D P0CA03 341 KIFIVLGIYDMFERPE                  HHHHHHHCCCCCCCCC c1aR-4 multi-selected 0.014 0.025 0.024 boundary 0.0

*candidates: NES candidates and false positives annotated with "cand" and "fp", respectively;
                if the segment is located in the disordered or boundary region, flagged with "D"; if the segment is located in the ordered region, flagged with "O";
                if the segment's beta-strand content is over 0.5, flagged with "beta".
*sequence: Hydrophobic positions are colored in red. The positions with the experimental evidence is marked with '*' (mutation) and '+' (functional sequence in NESdb or sites in validNES).
                The positions with '.' are for the region annotated in the long (more than 25 residues) functional sequence or site.
*multi-pattern: the consensus pattern is unique or multiple within the region (if the start# difference is less than 5, the segments are considered to be the same region)
*diso: average DISOPRED3-predicted disorder propensity for the segment
*spotd: average SPOT-Disorder-predicted disorder propensity for the segment
*iup: average IUPRED2A-predicted disorder propensity for the segment
*loc_DISO: location of the segment with respect to the ordered/disordered regions
*loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
*beta: beta-strand content in the middle of the segment