P12004 | Proliferating cell nuclear antigen   proviz   swissmodel

*Experimental: mutation (blue); functional region (cyan); located in the long functional sequence (lightblue)
*NES patterns: region with experimental evidence (red-orange-yellow); false positive region (gray)


# candidates id start# sequence secondary class multi-pattern diso spotd iup loc_DISO loc_CDD beta
1 cand_D P12004 11 ILKKVLEALKDLIN +*+++*++*++*+  HHHHHHHHHHHHHC c3-4 uniq 0.01 0.018 0.065 terminal boundary|pcna; 0.0
2 fp_beta_O P12004 41 DSSHVSLVQLTLRS                CCCCEEEEEEEECC c2-4 uniq 0.01 0.011 0.213 ORD MID|pcna; 0.857
3 fp_O P12004 68 MGVNLTSMSKILKCAG                  EEECHHHHHHHHHHCC c1aR-4 uniq 0.012 0.026 0.13 ORD MID|pcna; 0.0
4 fp_D P12004 112 SDYEMKLMDLDVEQ                EEEEECCCCCCCCC c2-4 multi 0.093 0.079 0.319 boundary MID|pcna; 0.286
5 fp_D P12004 115 EMKLMDLDVEQLGIPE                  EECCCCCCCCCCCCCC c1a-5 multi-selected 0.1 0.088 0.278 boundary MID|pcna; 0.0
6 fp_D P12004 117 KLMDLDVEQLGIPE                CCCCCCCCCCCCCC c2-5 multi 0.104 0.092 0.261 boundary MID|pcna; 0.0
7 fp_O P12004 143 EFARICRDLSHIGD                HHHHHHHHHCCCCC c3-4 multi-selected 0.01 0.018 0.112 ORD MID|pcna; 0.0
8 fp_O P12004 147 ICRDLSHIGDAVVISC                  HHHHHCCCCCEEEEEE c1d-4 multi 0.01 0.014 0.105 ORD MID|pcna; 0.143
9 fp_beta_D P12004 155 GDAVVISCAKDGVKFSA                   CCEEEEEEECCEEEEEE c1c-AT-4 multi-selected 0.01 0.012 0.138 boundary MID|pcna; 0.75
10 fp_beta_D P12004 156 DAVVISCAKDGVKFSA                  CEEEEEEECCEEEEEE c1d-AT-4 multi 0.01 0.011 0.141 boundary MID|pcna; 0.714
11 fp_beta_D P12004 195 VTIEMNEPVQLTFALRY                   EEEECCCCEEEEEEHHH c1c-4 uniq 0.084 0.038 0.219 boundary MID|pcna; 0.5
12 fp_beta_D P12004 201 EPVQLTFALRYLNFFT                  CCEEEEEEHHHHHHHH c1a-4 multi-selected 0.023 0.018 0.097 boundary MID|pcna; 0.571
13 fp_beta_D P12004 201 EPVQLTFALRYLNFFT                  CCEEEEEEHHHHHHHH c1d-AT-4 multi 0.023 0.018 0.097 boundary MID|pcna; 0.571
14 fp_D P12004 202 PVQLTFALRYLNFFT                 CEEEEEEHHHHHHHH c1b-AT-5 multi 0.018 0.016 0.086 boundary MID|pcna; 0.429
15 fp_D P12004 203 VQLTFALRYLNFFT                EEEEEEHHHHHHHH c2-4 multi-selected 0.014 0.015 0.08 boundary MID|pcna; 0.429
16 fp_D P12004 204 QLTFALRYLNFFTK                EEEEEHHHHHHHHH c3-AT multi 0.013 0.015 0.072 boundary MID|pcna; 0.286
17 fp_D P12004 214 FFTKATPLSSTVTLSM                  HHHHCCCCCCEEEEEE c1d-AT-5 multi-selected 0.016 0.025 0.159 __ MID|pcna; 0.143
18 fp_beta_O P12004 217 KATPLSSTVTLSMSA                 HCCCCCCEEEEEEEC c1b-AT-4 multi-selected 0.017 0.025 0.175 ORD MID|pcna; 0.571
19 fp_beta_D P12004 225 VTLSMSADVPLVVEYKI                   EEEEEECCCCEEEEEEE c1cR-4 uniq 0.011 0.011 0.156 boundary boundary|pcna; 0.5

*candidates: NES candidates and false positives annotated with "cand" and "fp", respectively;
                if the segment is located in the disordered or boundary region, flagged with "D"; if the segment is located in the ordered region, flagged with "O";
                if the segment's beta-strand content is over 0.5, flagged with "beta".
*sequence: Hydrophobic positions are colored in red. The positions with the experimental evidence is marked with '*' (mutation) and '+' (functional sequence in NESdb or sites in validNES).
                The positions with '.' are for the region annotated in the long (more than 25 residues) functional sequence or site.
*multi-pattern: the consensus pattern is unique or multiple within the region (if the start# difference is less than 5, the segments are considered to be the same region)
*diso: average DISOPRED3-predicted disorder propensity for the segment
*spotd: average SPOT-Disorder-predicted disorder propensity for the segment
*iup: average IUPRED2A-predicted disorder propensity for the segment
*loc_DISO: location of the segment with respect to the ordered/disordered regions
*loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
*beta: beta-strand content in the middle of the segment