P14340 | Nonstructural protein NS5   proviz   swissmodel

*Experimental: mutation (blue); functional region (cyan); located in the long functional sequence (lightblue)
*NES patterns: region with experimental evidence (red-orange-yellow); false positive region (gray)


# candidates id start# sequence secondary class multi-pattern diso spotd iup loc_DISO loc_CDD beta
1 fp_beta_D P14340 119 YGWNLVRLQSGVDVFF ................ CCCCEEEEECCCCCCC c1d-4 multi 0.015 0.025 0.165 boundary MID|FtsJ; 0.714
2 fp_D P14340 122 NLVRLQSGVDVFFIPP ................ CEEEEECCCCCCCCCC c1a-5 multi-selected 0.014 0.022 0.125 boundary MID|FtsJ; 0.286
3 fp_D P14340 154 PTVEAGRTLRVLNLVE ................ CCCCCCHHHHHHHHHH c1a-AT-4 uniq 0.121 0.137 0.326 boundary MID|FtsJ; 0.0
4 fp_D P14340 168 VENWLNNNTQFCIKVLN ................. HHHHHCCCCCEEEEECC c1c-AT-4 uniq 0.01 0.018 0.124 boundary MID|FtsJ; 0.25
5 fp_O P14340 176 TQFCIKVLNPYMPSVI ................ CCEEEEECCCCCHHHH c1aR-5 uniq 0.014 0.02 0.148 ORD MID|FtsJ; 0.429
6 fp_O P14340 186 YMPSVIEKMEALQR .............. CCHHHHHHHHHHHH c3-4 uniq 0.02 0.024 0.227 ORD MID|FtsJ; 0.0
7 fp_D P14340 220 WVSNASGNIVSSVNMIS ................. EEECCCCCCCCHHHHHH c1c-AT-5 uniq 0.017 0.059 0.214 boundary boundary|FtsJ; boundary|Flavi_NS5 superfamily; 0.0
8 fp_D P14340 228 IVSSVNMISRMLINR ............... CCCHHHHHHHHHHHH c1b-5 multi 0.04 0.058 0.16 boundary boundary|FtsJ; boundary|Flavi_NS5 superfamily; 0.0
9 fp_D P14340 231 SVNMISRMLINRFTMRY ................. HHHHHHHHHHHHHCCCC c1c-5 multi-selected 0.061 0.066 0.181 boundary boundary|FtsJ; boundary|Flavi_NS5 superfamily; 0.0
10 fp_D P14340 234 MISRMLINRFTMRY .............. HHHHHHHHHHCCCC c2-5 multi-selected 0.069 0.066 0.172 boundary boundary|FtsJ; boundary|Flavi_NS5 superfamily; 0.0
11 fp_D P14340 254 PDVDLGSGTRNIGIES ................ CCCCCCCCCCCCCCCC c1a-AT-4 uniq 0.066 0.167 0.427 boundary boundary|FtsJ; boundary|Flavi_NS5 superfamily; 0.0
12 fp_D P14340 273 NLDIIGKRIEKIKQ .............. CHHHHHHHHHHHHH c3-4 uniq 0.066 0.073 0.37 boundary MID|Flavi_NS5 superfamily; 0.0
13 fp_D P14340 313 QTGSASSMVNGVVRLLT ................. CCCCCCCHHHHHHHHHC c1c-AT-4 uniq 0.144 0.104 0.377 boundary MID|Flavi_NS5 superfamily; 0.0
14 cand_D P14340 330 KPWDVVPMVTQMAMTD ....**..*....... CCCCCCCCEEEEEECC c1a-4 multi-selected 0.013 0.082 0.372 boundary MID|Flavi_NS5 superfamily; 0.429
15 cand_D P14340 330 KPWDVVPMVTQMAMTD ....**..*....... CCCCCCCCEEEEEECC c1d-4 multi 0.013 0.082 0.372 boundary MID|Flavi_NS5 superfamily; 0.429
16 cand_beta_D P14340 331 PWDVVPMVTQMAMTD ...**..*....... CCCCCCCEEEEEECC c1b-4 multi 0.013 0.084 0.38 boundary MID|Flavi_NS5 superfamily; 0.571
17 cand_beta_D P14340 334 VVPMVTQMAMTD **..*....... CCCCEEEEEECC c2-rev multi-selected 0.012 0.087 0.406 boundary MID|Flavi_NS5 superfamily; 0.833
18 fp_D P14340 473 AIWYMWLGARFLEFEA                  EEEEECCCHHHHHHHH c1a-AT-5 multi-selected 0.021 0.042 0.038 __ MID|Flavi_NS5 superfamily; 0.143
19 fp_D P14340 475 WYMWLGARFLEFEA                EEECCCHHHHHHHH c2-AT-4 multi 0.016 0.041 0.035 boundary MID|Flavi_NS5 superfamily; 0.0
20 fp_D P14340 479 LGARFLEFEALGFLN                 CCHHHHHHHHHCCCC c1b-4 multi 0.015 0.044 0.049 boundary MID|Flavi_NS5 superfamily; 0.0
21 fp_D P14340 480 GARFLEFEALGFLN                CHHHHHHHHHCCCC c2-4 multi-selected 0.016 0.045 0.05 boundary MID|Flavi_NS5 superfamily; 0.0
22 fp_D P14340 511 GLHKLGYILRDVSK                CCCCHHHHHHHHHC c3-4 uniq 0.048 0.045 0.244 boundary MID|Flavi_NS5 superfamily; 0.0
23 fp_D P14340 624 EGEGVFKSIQHLTITE                  HHCCCCCCCCCCCHHH c1a-4 multi-selected 0.186 0.06 0.266 boundary MID|Flavi_NS5 superfamily; 0.0
24 fp_D P14340 625 GEGVFKSIQHLTITE                 HCCCCCCCCCCCHHH c1b-4 multi 0.195 0.062 0.259 boundary MID|Flavi_NS5 superfamily; 0.0
25 fp_D P14340 631 SIQHLTITEEIAVQN                 CCCCCCHHHHHHHHH c1b-AT-5 uniq 0.18 0.052 0.228 boundary MID|Flavi_NS5 superfamily; 0.0
26 fp_D P14340 673 RFASALTALNDMGK                CHHHHHHHHHHHCC c3-AT uniq 0.013 0.047 0.247 boundary MID|Flavi_NS5 superfamily; 0.0
27 fp_D P14340 862 NIQAAINQVRSLIG                HHHHHHHHHHHHHC c3-AT uniq 0.016 0.059 0.265 boundary boundary|Flavi_NS5 superfamily; 0.0

*candidates: NES candidates and false positives annotated with "cand" and "fp", respectively;
                if the segment is located in the disordered or boundary region, flagged with "D"; if the segment is located in the ordered region, flagged with "O";
                if the segment's beta-strand content is over 0.5, flagged with "beta".
*sequence: Hydrophobic positions are colored in red. The positions with the experimental evidence is marked with '*' (mutation) and '+' (functional sequence in NESdb or sites in validNES).
                The positions with '.' are for the region annotated in the long (more than 25 residues) functional sequence or site.
*multi-pattern: the consensus pattern is unique or multiple within the region (if the start# difference is less than 5, the segments are considered to be the same region)
*diso: average DISOPRED3-predicted disorder propensity for the segment
*spotd: average SPOT-Disorder-predicted disorder propensity for the segment
*iup: average IUPRED2A-predicted disorder propensity for the segment
*loc_DISO: location of the segment with respect to the ordered/disordered regions
*loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
*beta: beta-strand content in the middle of the segment