P32888 | Triplex capsid protein VP19C   proviz   swissmodel

*Experimental: mutation (blue); functional region (cyan); located in the long functional sequence (lightblue)
*NES patterns: region with experimental evidence (red-orange-yellow); false positive region (gray)


# candidates id start# sequence secondary class multi-pattern diso spotd iup loc_DISO loc_CDD beta
1 fp_D P32888 175 ESGCTRAGLVSFNFLV                  CCCCEECCCHHHHHHH c1a-AT-4 multi-selected 0.056 0.092 0.145 boundary MID|PHA03261; 0.286
2 fp_D P32888 177 GCTRAGLVSFNFLVAA                  CCEECCCHHHHHHHHH c1d-AT-4 multi 0.046 0.068 0.108 boundary MID|PHA03261; 0.0
3 fp_D P32888 177 GCTRAGLVSFNFLV                CCEECCCHHHHHHH c2-AT-4 multi 0.047 0.07 0.116 boundary MID|PHA03261; 0.143
4 fp_O P32888 222 RLDRFSECLRAMVH                HHHHHHHHHHHHHH c3-4 uniq 0.015 0.016 0.146 ORD MID|PHA03261; 0.0
5 fp_D P32888 242 EVMRFFGGLVSWVTQDE                   CCHHCCCCCEEEEECCC c1cR-4 uniq 0.01 0.021 0.071 boundary MID|PHA03261; 0.375
6 fp_beta_D P32888 281 PRSAVILPACAFVDLDA                   CCCEEEECCCEEEECCC c1c-AT-4 multi-selected 0.017 0.03 0.165 boundary MID|PHA03261; 0.625
7 fp_beta_D P32888 282 RSAVILPACAFVDLDA                  CCEEEECCCEEEECCC c1d-AT-4 multi 0.014 0.025 0.152 boundary MID|PHA03261; 0.571
8 fp_beta_D P32888 287 LPACAFVDLDAELGLGG                   ECCCEEEECCCCCCCCC c1c-AT-4 multi-selected 0.013 0.046 0.099 boundary MID|PHA03261; 0.5
9 fp_D P32888 288 PACAFVDLDAELGLGG                  CCCEEEECCCCCCCCC c1d-4 multi 0.013 0.048 0.093 boundary MID|PHA03261; 0.429
10 fp_beta_O P32888 302 GGPGAAFLYLVFTY                CCCCCEEEEEEEEE c2-AT-4 uniq 0.011 0.037 0.089 ORD MID|PHA03261; 0.714
11 cand_D P32888 337 GLEPALERLFGRLRITN      *++*+++*+*   CHHHHHHHHHHHHHCCC c1c-AT-5 multi 0.012 0.097 0.336 boundary MID|PHA03261; 0.0
12 cand_D P32888 338 LEPALERLFGRLRITN     *++*+++*+*   HHHHHHHHHHHHHCCC c1a-4 multi-selected 0.011 0.098 0.343 boundary MID|PHA03261; 0.0
13 cand_D P32888 338 LEPALERLFGRLRITN     *++*+++*+*   HHHHHHHHHHHHHCCC c1d-4 multi 0.011 0.098 0.343 boundary MID|PHA03261; 0.0
14 fp_D P32888 413 ARTCTYAAFAELGMMP                  CCHHHHHHHHHHCCCC c1a-AT-4 multi-selected 0.026 0.052 0.328 boundary MID|PHA03261; 0.0
15 fp_D P32888 415 TCTYAAFAELGMMP                HHHHHHHHHHCCCC c2-AT-4 multi 0.024 0.052 0.326 boundary MID|PHA03261; 0.0
16 fp_beta_D P32888 434 CLHRTERFGAVSVPV                 CEEEEEEECCEECCE c1b-AT-5 multi 0.071 0.051 0.321 boundary boundary|PHA03261; 0.714
17 fp_beta_D P32888 437 RTERFGAVSVPVVI                EEEEECCEECCEEE c2-AT-4 multi 0.054 0.041 0.282 boundary boundary|PHA03261; 0.571
18 fp_beta_D P32888 440 RFGAVSVPVVILEG                EECCEECCEEEECC c3-4 multi-selected 0.032 0.032 0.23 boundary boundary|PHA03261; 0.571

*candidates: NES candidates and false positives annotated with "cand" and "fp", respectively;
                if the segment is located in the disordered or boundary region, flagged with "D"; if the segment is located in the ordered region, flagged with "O";
                if the segment's beta-strand content is over 0.5, flagged with "beta".
*sequence: Hydrophobic positions are colored in red. The positions with the experimental evidence is marked with '*' (mutation) and '+' (functional sequence in NESdb or sites in validNES).
                The positions with '.' are for the region annotated in the long (more than 25 residues) functional sequence or site.
*multi-pattern: the consensus pattern is unique or multiple within the region (if the start# difference is less than 5, the segments are considered to be the same region)
*diso: average DISOPRED3-predicted disorder propensity for the segment
*spotd: average SPOT-Disorder-predicted disorder propensity for the segment
*iup: average IUPRED2A-predicted disorder propensity for the segment
*loc_DISO: location of the segment with respect to the ordered/disordered regions
*loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
*beta: beta-strand content in the middle of the segment