P34078 | Protein LTV1   proviz   swissmodel

*Experimental: mutation (blue); functional region (cyan); located in the long functional sequence (lightblue)
*NES patterns: region with experimental evidence (red-orange-yellow); false positive region (gray)


# candidates id start# sequence secondary class multi-pattern diso spotd iup loc_DISO loc_CDD beta
1 fp_D P34078 63 RRAHVGEAALYGINFDD                   CCCCHHHHHHCCCCCCC c1c-AT-4 multi-selected 0.106 0.824 0.43 DISO MID|LTV; 0.0
2 fp_D P34078 66 HVGEAALYGINFDD                CHHHHHHCCCCCCC c2-AT-5 multi 0.062 0.803 0.407 DISO MID|LTV; 0.0
3 cand_D P34078 172 VLEALEDEAYVVND ++++++++++++++ HHHHHHHCCCCCCC c3-AT multi-selected 0.326 0.522 0.363 DISO MID|LTV; 0.0
4 cand_D P34078 176 LEDEAYVVNDDVVVED +++++++++++      HHHCCCCCCCCHHHHH c1d-AT-4 multi 0.575 0.634 0.355 DISO MID|LTV; 0.0
5 fp_D P34078 330 QKKGAMSDVSGFSMSS                  CCCCCCCCCCCCCCCC c1a-AT-4 multi-selected 0.824 0.873 0.528 DISO MID|LTV; 0.0
6 fp_D P34078 331 KKGAMSDVSGFSMSS                 CCCCCCCCCCCCCCC c1b-4 multi 0.814 0.867 0.523 DISO MID|LTV; 0.0
7 fp_D P34078 344 SSSAIARTETMTVLD                 CCCCCCCCCCHHHHH c1b-AT-4 uniq 0.265 0.627 0.512 DISO MID|LTV; 0.0
8 fp_D P34078 421 EIERLKEAADEVSK                HHHHHHHHHHHHCC c3-AT uniq 0.582 0.643 0.535 DISO boundary|LTV; 0.0
9 fp_D P34078 450 KLEKVTNTLSSLKFXX                  HHHHHHCCCCCCCC c1a-5-Ct multi-selected 0.876 0.834 0.414 DISO boundary|LTV; 0.0
10 fp_D P34078 450 KLEKVTNTLSSLKFXX                  HHHHHHCCCCCCCC c1d-AT-5-Ct multi 0.876 0.834 0.414 DISO boundary|LTV; 0.0
11 fp_D P34078 451 LEKVTNTLSSLKFXX                 HHHHHCCCCCCCC c1b-AT-4-Ct multi 0.869 0.834 0.398 DISO boundary|LTV; 0.0

*candidates: NES candidates and false positives annotated with "cand" and "fp", respectively;
                if the segment is located in the disordered or boundary region, flagged with "D"; if the segment is located in the ordered region, flagged with "O";
                if the segment's beta-strand content is over 0.5, flagged with "beta".
*sequence: Hydrophobic positions are colored in red. The positions with the experimental evidence is marked with '*' (mutation) and '+' (functional sequence in NESdb or sites in validNES).
                The positions with '.' are for the region annotated in the long (more than 25 residues) functional sequence or site.
*multi-pattern: the consensus pattern is unique or multiple within the region (if the start# difference is less than 5, the segments are considered to be the same region)
*diso: average DISOPRED3-predicted disorder propensity for the segment
*spotd: average SPOT-Disorder-predicted disorder propensity for the segment
*iup: average IUPRED2A-predicted disorder propensity for the segment
*loc_DISO: location of the segment with respect to the ordered/disordered regions
*loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
*beta: beta-strand content in the middle of the segment