P38398 | Breast cancer type 1 susceptibility protein   proviz   swissmodel

*Experimental: mutation (blue); functional region (cyan); located in the long functional sequence (lightblue)
*NES patterns: region with experimental evidence (red-orange-yellow); false positive region (gray)


# candidates id start# sequence secondary class multi-pattern diso spotd iup loc_DISO loc_CDD beta
1 fp_D P38398 4 SALRVEEVQNVINAMQ                  CHHHHHHHHHHHHHHH c1aR-5 multi-selected 0.644 0.158 0.106 DISO boundary|RAD18 superfamily; 0.0
2 fp_D P38398 7 RVEEVQNVINAMQK                HHHHHHHHHHHHHH c3-4 multi-selected 0.589 0.096 0.096 DISO boundary|RAD18 superfamily; 0.0
3 fp_D P38398 10 EVQNVINAMQKILE             ++ HHHHHHHHHHHHCC c3-4 multi-selected 0.511 0.07 0.071 DISO boundary|RAD18 superfamily; 0.0
4 cand_D P38398 24 CPICLELIKEPVSTKC +++++++          CCCCCCCCCCCCCCCC c1aR-4 uniq 0.646 0.096 0.03 DISO small|RING-HC_BRCA1; boundary|RAD18 superfamily; 0.0
5 fp_D P38398 38 KCDHIFCKFCMLKLLN                  CCCCCCCHHHHHHHHH c1a-4 multi-selected 0.675 0.13 0.027 DISO small|RING-HC_BRCA1; boundary|RAD18 superfamily; 0.0
6 fp_D P38398 39 CDHIFCKFCMLKLLN                 CCCCCCHHHHHHHHH c1b-4 multi 0.671 0.125 0.028 DISO small|RING-HC_BRCA1; MID|RAD18 superfamily; 0.0
7 cand_D P38398 75 ESTRFSQLVEELLKIIC       +++++*+++*+ CCHHHHHHHHHHHHHHH c1c-4 multi-selected 0.088 0.351 0.13 DISO MID|RAD18 superfamily; 0.0
8 cand_D P38398 78 RFSQLVEELLKIIC    +++++*+++*+ HHHHHHHHHHHHHH c3-4 multi 0.09 0.289 0.088 DISO MID|RAD18 superfamily; 0.0
9 cand_D P38398 82 LVEELLKIICAFQLDT ++++*+++*++*+*++ HHHHHHHHHHHHCCCC c1a-5 multi-selected 0.195 0.216 0.048 DISO MID|RAD18 superfamily; 0.0
10 cand_D P38398 82 LVEELLKIICAFQLDT ++++*+++*++*+*++ HHHHHHHHHHHHCCCC c1d-5 multi 0.195 0.216 0.048 DISO MID|RAD18 superfamily; 0.0
11 cand_D P38398 83 VEELLKIICAFQLDT +++*+++*++*+*++ HHHHHHHHHHHCCCC c1b-4 multi 0.202 0.211 0.046 DISO MID|RAD18 superfamily; 0.0
12 fp_D P38398 143 ENPSLQETSLSVQLSN                  CCCCCCCCCCCCCCCC c1d-AT-4 uniq 0.977 0.986 0.543 DISO boundary|RAD18 superfamily; 0.0
13 fp_D P38398 286 ENSSLLLTKDRMNVEK                  CCCCCCCCCCCCCCCC c1d-AT-4 uniq 0.899 0.977 0.559 DISO 0.0
14 fp_D P38398 408 KVADVLDVLNEVDE                HHCCCCCCCCCCCC c3-4 uniq 0.986 0.963 0.46 DISO MID|BRCT_assoc; 0.0
15 fp_D P38398 470 SLPNLSHVTENLIIGA                  CCCCCCCCCCCCCCCC c1a-AT-5 multi-selected 0.817 0.944 0.403 DISO MID|BRCT_assoc; 0.0
16 fp_D P38398 470 SLPNLSHVTENLIIGA                  CCCCCCCCCCCCCCCC c1d-5 multi 0.817 0.944 0.403 DISO MID|BRCT_assoc; 0.0
17 fp_D P38398 583 KAEPISSSISNMELEL                  CCCCCCCCCCCCCCCC c1a-4 multi-selected 0.985 0.989 0.652 DISO 0.0
18 fp_D P38398 587 ISSSISNMELELNIHN                  CCCCCCCCCCCCCCCC c1d-4 multi 0.984 0.988 0.677 DISO 0.0
19 fp_D P38398 613 RKSSTRHIHALELVV                 CCCCCCCCCCCEEEC c1b-AT-4 multi 0.951 0.981 0.675 DISO 0.0
20 fp_D P38398 616 STRHIHALELVVSR                CCCCCCCCEEECCC c2-AT-4 multi-selected 0.944 0.974 0.637 DISO 0.286
21 fp_D P38398 775 TDYGTQESISLLEVST                  CCCCCCCCCCCCCCCC c1a-AT-4 uniq 0.974 0.961 0.512 DISO 0.0
22 fp_D P38398 850 SELDAQYLQNTFKVSK                  CCHHHHHHHHHHCCCC c1d-AT-4 uniq 0.921 0.95 0.444 DISO 0.0
23 fp_D P38398 913 NESNIKPVQTVNITA                 CCCCCCCCCCCCCCC c1b-4 uniq 0.983 0.985 0.588 DISO 0.0
24 fp_D P38398 1043 NINEVGSSTNEVGS                CCCCCCCCCCCCCC c3-AT uniq 0.988 0.986 0.611 DISO 0.0
25 fp_D P38398 1076 RGPKLNAMLRLGVLQ                 CCCCCCCCCCCCCCC c1b-4 uniq 0.95 0.97 0.461 DISO 0.0
26 fp_D P38398 1082 AMLRLGVLQPEVYKQS                  CCCCCCCCCCCCCCCC c1aR-4 uniq 0.939 0.953 0.46 DISO 0.0
27 fp_D P38398 1219 EDEELPCFQHLLFGK                 CCCCCCHHHHHCCCC c1b-4 multi 0.955 0.912 0.385 DISO 0.0
28 fp_D P38398 1222 ELPCFQHLLFGK              CCCHHHHHCCCC c2-rev multi-selected 0.951 0.901 0.362 DISO 0.0
29 fp_D P38398 1403 NLIKLQQEMAELEA                HHHHHHHHHHHHHH c3-4 uniq 0.96 0.824 0.686 DISO 0.0
30 fp_D P38398 1468 NPEGLSADKFEVSA                CCCCCCCCCCCCCC c2-AT-4 uniq 0.979 0.826 0.7 DISO 0.0
31 fp_D P38398 1557 DLEGTPYLESGISLFS                  CCCCCCCCCCCCCCCC c1d-AT-5 uniq 0.989 0.894 0.628 DISO 0.0
32 fp_D P38398 1589 RVGNIPSSTSALKVPQ                  CCCCCCCCCCCCCCCC c1a-AT-5 uniq 0.99 0.936 0.606 DISO 0.0
33 fp_D P38398 1639 LTASTERVNKRMSMVV                  CCCCCCCCCCEEEEEE c1d-AT-4 uniq 0.604 0.46 0.554 boundary boundary|BRCT; 0.143
34 fp_D P38398 1676 LTNLITEETTHVVMKT                  EECCCCCCCCEEEEEC c1a-AT-4 uniq 0.033 0.022 0.367 boundary MID|BRCT; 0.143
35 fp_D P38398 1787 CGASVVKELSSFTLGT                  CCCEEEECCCCCCCCC c1a-4 multi-selected 0.414 0.077 0.089 DISO MID|BRCT; 0.429
36 fp_D P38398 1788 GASVVKELSSFTLGT                 CCEEEECCCCCCCCC c1b-4 multi 0.428 0.08 0.087 DISO MID|BRCT; 0.286
37 fp_D P38398 1796 SSFTLGTGVHPIVVVQP                   CCCCCCCCCEEEEEECC c1cR-4 uniq 0.642 0.071 0.184 DISO MID|BRCT; 0.375
38 fp_D P38398 1830 APVVTREWVLDSVALYQ                   CCEECCCHHHHHHHHCC c1c-AT-4 uniq 0.163 0.021 0.09 DISO boundary|BRCT; 0.0

*candidates: NES candidates and false positives annotated with "cand" and "fp", respectively;
                if the segment is located in the disordered or boundary region, flagged with "D"; if the segment is located in the ordered region, flagged with "O";
                if the segment's beta-strand content is over 0.5, flagged with "beta".
*sequence: Hydrophobic positions are colored in red. The positions with the experimental evidence is marked with '*' (mutation) and '+' (functional sequence in NESdb or sites in validNES).
                The positions with '.' are for the region annotated in the long (more than 25 residues) functional sequence or site.
*multi-pattern: the consensus pattern is unique or multiple within the region (if the start# difference is less than 5, the segments are considered to be the same region)
*diso: average DISOPRED3-predicted disorder propensity for the segment
*spotd: average SPOT-Disorder-predicted disorder propensity for the segment
*iup: average IUPRED2A-predicted disorder propensity for the segment
*loc_DISO: location of the segment with respect to the ordered/disordered regions
*loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
*beta: beta-strand content in the middle of the segment