P38861 | 60S ribosomal export protein NMD3   proviz   swissmodel

*Experimental: mutation (blue); functional region (cyan); located in the long functional sequence (lightblue)
*NES patterns: region with experimental evidence (red-orange-yellow); false positive region (gray)


# candidates id start# sequence secondary class multi-pattern diso spotd iup loc_DISO loc_CDD beta
1 fp_O P38861 85 CLRRLKGLTKVRLVD                 HHHHCCCCCCEEECC c1b-5 uniq 0.043 0.026 0.049 ORD MID|NMD3; 0.143
2 fp_beta_O P38861 120 GEAMTNTIIQQTFEVEY                   EECCCCEEEEEEEEEEE c1c-AT-4 uniq 0.017 0.024 0.121 ORD MID|NMD3; 0.75
3 fp_beta_O P38861 127 IIQQTFEVEYIVIAM                 EEEEEEEEEEEEECC c1b-AT-5 multi 0.013 0.009 0.072 ORD MID|NMD3; 1.0
4 fp_beta_O P38861 128 IQQTFEVEYIVIAM                EEEEEEEEEEEECC c2-4 multi-selected 0.013 0.009 0.066 ORD MID|NMD3; 1.0
5 fp_beta_D P38861 130 QTFEVEYIVIAMQCPD                  EEEEEEEEEECCCCCC c1aR-4 multi-selected 0.014 0.016 0.067 boundary MID|NMD3; 0.857
6 fp_D P38861 166 PHKRTFLFLEQLILKH                  CCCHHHHHHHHHHHHH c1a-AT-4 multi 0.036 0.04 0.067 __ MID|NMD3; 0.0
7 fp_D P38861 166 PHKRTFLFLEQLILKH                  CCCHHHHHHHHHHHHH c1d-AT-4 multi 0.036 0.04 0.067 __ MID|NMD3; 0.0
8 fp_D P38861 167 HKRTFLFLEQLILKH                 CCHHHHHHHHHHHHH c1b-4 multi 0.031 0.038 0.061 __ MID|NMD3; 0.0
9 fp_D P38861 168 KRTFLFLEQLILKH                CHHHHHHHHHHHHH c2-4 multi-selected 0.027 0.034 0.059 __ MID|NMD3; 0.0
10 fp_D P38861 179 LKHNAHVDTISISE                HHHCCCCCCCCEEE c2-AT-4 uniq 0.021 0.052 0.117 __ MID|NMD3; 0.0
11 fp_O P38861 186 DTISISEAKDGLDFFY                  CCCCEEECCCCEEEEE c1d-AT-4 multi 0.017 0.032 0.134 ORD MID|NMD3; 0.429
12 fp_O P38861 189 SISEAKDGLDFFYA                CEEECCCCEEEEEC c3-AT multi-selected 0.014 0.026 0.124 ORD MID|NMD3; 0.429
13 fp_D P38861 206 HAVKMIDFLNAVVPIKH                   HHHHHHHHHCCCCCCCC c1cR-4 multi 0.024 0.051 0.09 boundary MID|NMD3; 0.0
14 fp_D P38861 206 HAVKMIDFLNAVVPIK                  HHHHHHHHHCCCCCCC c1aR-5 multi-selected 0.021 0.046 0.084 boundary MID|NMD3; 0.0
15 fp_beta_D P38861 235 TGASTYKFSYSVEIVP                  CCCEEEEEEEEEEEEE c1d-AT-4 uniq 0.019 0.052 0.114 boundary MID|NMD3; 1.0
16 fp_O P38861 263 LAKSMGNISQFVLCS                 HHHHHCCCCEEEEEE c1b-4 uniq 0.025 0.032 0.068 ORD MID|NMD3; 0.286
17 fp_beta_O P38861 271 SQFVLCSKISNTVQFMD                   CEEEEEEEEEEEEEEEC c1cR-5 multi 0.011 0.012 0.106 ORD MID|NMD3; 1.0
18 fp_beta_O P38861 271 SQFVLCSKISNTVQFMD                   CEEEEEEEEEEEEEEEC c1c-4 multi-selected 0.011 0.012 0.106 ORD MID|NMD3; 1.0
19 fp_O P38861 304 APFNALADVTQLVEFIV                   CCCCCCCCCCCCEEEEE c1c-AT-4 multi 0.01 0.021 0.045 ORD MID|NMD3; 0.0
20 fp_O P38861 305 PFNALADVTQLVEFIV                  CCCCCCCCCCCEEEEE c1a-AT-5 multi 0.01 0.02 0.041 ORD MID|NMD3; 0.0
21 fp_O P38861 305 PFNALADVTQLVEFIV                  CCCCCCCCCCCEEEEE c1d-5 multi 0.01 0.02 0.041 ORD MID|NMD3; 0.0
22 fp_O P38861 308 ALADVTQLVEFIVLD                 CCCCCCCCEEEEEEE c1b-5 multi 0.01 0.017 0.042 ORD MID|NMD3; 0.429
23 fp_O P38861 308 ALADVTQLVEFIVLDV                  CCCCCCCCEEEEEEEE c1a-5 multi-selected 0.01 0.017 0.049 ORD MID|NMD3; 0.429
24 fp_O P38861 308 ALADVTQLVEFIVLDV                  CCCCCCCCEEEEEEEE c1d-5 multi 0.01 0.017 0.049 ORD MID|NMD3; 0.429
25 fp_O P38861 309 LADVTQLVEFIVLD                CCCCCCCEEEEEEE c2-AT-4 multi 0.01 0.016 0.042 ORD MID|NMD3; 0.429
26 fp_beta_O P38861 309 LADVTQLVEFIVLDV                 CCCCCCCEEEEEEEE c1b-AT-4 multi 0.01 0.016 0.049 ORD MID|NMD3; 0.571
27 fp_beta_O P38861 311 DVTQLVEFIVLDVDS                 CCCCCEEEEEEEEEE c1b-5 multi 0.01 0.015 0.057 ORD MID|NMD3; 0.857
28 fp_beta_O P38861 312 VTQLVEFIVLDVDS                CCCCEEEEEEEEEE c2-4 multi 0.01 0.014 0.06 ORD MID|NMD3; 0.857
29 fp_O P38861 336 ADITVARTSDLGVND                 EEEEEEECCCCCCCC c1b-AT-4 uniq 0.027 0.048 0.181 ORD MID|NMD3; 0.429
30 fp_O P38861 351 QVYYVRSHLGGICH                CEEEEECCCCCCCC c3-4 uniq 0.011 0.033 0.121 ORD boundary|NMD3; 0.429
31 fp_D P38861 385 DGLNIDYVPDVVLVKK                  CCCCCCCCCCEEEEEE c1aR-4 uniq 0.034 0.066 0.139 boundary boundary|NMD3; 0.143
32 cand_D P38861 492 NIDELLDELDEMTLED ++++++++++++     CHHHHHHHHHCCCCCC c1a-5 multi-selected 0.767 0.512 0.682 DISO 0.0
33 cand_D P38861 493 IDELLDELDEMTLED +++++++++++     HHHHHHHHHCCCCCC c1b-4 multi 0.774 0.522 0.676 DISO 0.0

*candidates: NES candidates and false positives annotated with "cand" and "fp", respectively;
                if the segment is located in the disordered or boundary region, flagged with "D"; if the segment is located in the ordered region, flagged with "O";
                if the segment's beta-strand content is over 0.5, flagged with "beta".
*sequence: Hydrophobic positions are colored in red. The positions with the experimental evidence is marked with '*' (mutation) and '+' (functional sequence in NESdb or sites in validNES).
                The positions with '.' are for the region annotated in the long (more than 25 residues) functional sequence or site.
*multi-pattern: the consensus pattern is unique or multiple within the region (if the start# difference is less than 5, the segments are considered to be the same region)
*diso: average DISOPRED3-predicted disorder propensity for the segment
*spotd: average SPOT-Disorder-predicted disorder propensity for the segment
*iup: average IUPRED2A-predicted disorder propensity for the segment
*loc_DISO: location of the segment with respect to the ordered/disordered regions
*loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
*beta: beta-strand content in the middle of the segment