P46934-4 | E3 ubiquitin-protein ligase NEDD4 Isoform 4   proviz   swissmodel

*Experimental: mutation (blue); functional region (cyan); located in the long functional sequence (lightblue)
*NES patterns: region with experimental evidence (red-orange-yellow); false positive region (gray)


# candidates id start# sequence secondary class multi-pattern diso spotd iup loc_DISO loc_CDD beta
1 fp_beta_D P46934-4 17 NSRIVRVRVIAGIGLAK                   CCEEEEEEEEEECCCCC c1c-4 multi-selected 0.101 0.065 0.109 boundary boundary|C2_NEDD4_NEDD4L; 1.0
2 fp_beta_D P46934-4 19 RIVRVRVIAGIGLAK                 EEEEEEEEEECCCCC c1b-5 multi 0.069 0.048 0.112 boundary boundary|C2_NEDD4_NEDD4L; 0.857
3 fp_D P46934-4 94 ENRLTRDDFLGQVDVPL                   CCCCCCCCCCCEEEECC c1c-AT-4 uniq 0.115 0.079 0.292 boundary MID|C2_NEDD4_NEDD4L; 0.125
4 cand_D P46934-4 293 VPTHLAEELNARLTIFG         +++++++   CCCCHHHHCCCCCCCCC c1c-4 multi-selected 0.854 0.649 0.609 DISO 0.0
5 cand_D P46934-4 294 PTHLAEELNARLTIFG        +++++++   CCCHHHHCCCCCCCCC c1d-AT-4 multi 0.849 0.646 0.594 DISO 0.0
6 fp_O P46934-4 633 SYFKFIGRVAGMAVYH                  CCEEEHHHHHHHHHHH c1a-4 multi-selected 0.01 0.01 0.022 ORD MID|HECTc; 0.143
7 fp_O P46934-4 634 YFKFIGRVAGMAVYH                 CEEEHHHHHHHHHHH c1b-5 multi 0.01 0.01 0.02 ORD MID|HECTc; 0.0
8 fp_D P46934-4 652 LDGFFIRPFYKMMLHK                  CCCCCCHHHHHHHHCC c1a-4 multi-selected 0.025 0.02 0.016 boundary MID|HECTc; 0.0
9 fp_D P46934-4 653 DGFFIRPFYKMMLHK                 CCCCCHHHHHHHHCC c1b-4 multi 0.026 0.021 0.016 boundary MID|HECTc; 0.0
10 fp_O P46934-4 741 FVNRIQKQMAAFKE                ECHHHHHHHHHHHH c3-4 uniq 0.026 0.026 0.042 ORD MID|HECTc; 0.0
11 fp_O P46934-4 748 QMAAFKEGFFELIP                HHHHHHHHCCCCCC c3-4 uniq 0.026 0.022 0.053 ORD MID|HECTc; 0.0
12 fp_O P46934-4 756 FFELIPQDLIKIFD                CCCCCCCHHHCCCC c3-4 uniq 0.03 0.022 0.049 ORD MID|HECTc; 0.0
13 fp_O P46934-4 772 ELELLMCGLGDVDVND                  HHHHHHHCCCCCCHHH c1a-5 multi-selected 0.021 0.026 0.124 ORD MID|HECTc; 0.0
14 fp_O P46934-4 773 LELLMCGLGDVDVND                 HHHHHHCCCCCCHHH c1b-4 multi 0.02 0.027 0.127 ORD MID|HECTc; 0.0
15 fp_D P46934-4 804 VIQWFWKAVLMMDS                HHHHHHHHHHCCCH c3-4 uniq 0.017 0.024 0.043 boundary MID|HECTc; 0.0
16 fp_D P46934-4 860 KLPRAHTCFNRLDLPP                  CCCCCCCCCCCCCCCC c1a-AT-5 multi-selected 0.08 0.049 0.273 boundary boundary|HECTc; 0.0
17 fp_D P46934-4 862 PRAHTCFNRLDLPP                CCCCCCCCCCCCCC c2-AT-4 multi 0.082 0.046 0.268 boundary boundary|HECTc; 0.0

*candidates: NES candidates and false positives annotated with "cand" and "fp", respectively;
                if the segment is located in the disordered or boundary region, flagged with "D"; if the segment is located in the ordered region, flagged with "O";
                if the segment's beta-strand content is over 0.5, flagged with "beta".
*sequence: Hydrophobic positions are colored in red. The positions with the experimental evidence is marked with '*' (mutation) and '+' (functional sequence in NESdb or sites in validNES).
                The positions with '.' are for the region annotated in the long (more than 25 residues) functional sequence or site.
*multi-pattern: the consensus pattern is unique or multiple within the region (if the start# difference is less than 5, the segments are considered to be the same region)
*diso: average DISOPRED3-predicted disorder propensity for the segment
*spotd: average SPOT-Disorder-predicted disorder propensity for the segment
*iup: average IUPRED2A-predicted disorder propensity for the segment
*loc_DISO: location of the segment with respect to the ordered/disordered regions
*loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
*beta: beta-strand content in the middle of the segment