P48436 | Transcription factor SOX-9   proviz   swissmodel

*Experimental: mutation (blue); functional region (cyan); located in the long functional sequence (lightblue)
*NES patterns: region with experimental evidence (red-orange-yellow); false positive region (gray)


# candidates id start# sequence secondary class multi-pattern diso spotd iup loc_DISO loc_CDD beta
1 fp_D P48436 101 NKPHVKRPMNAFMVWA                  CCCCCCCCCHHHHHHH c1a-4 uniq 0.776 0.976 0.591 DISO boundary|Sox_N; boundary|SOX-TCF_HMG-box; 0.0
2 fp_D P48436 150 EKRPFVEEAERLRVQH                  CCCCCHHHHHHHHHCC c1a-AT-4 multi-selected 0.256 0.874 0.63 DISO boundary|SOX-TCF_HMG-box; 0.0
3 fp_D P48436 151 KRPFVEEAERLRVQH                 CCCCHHHHHHHHHCC c1b-AT-4 multi 0.26 0.875 0.637 DISO boundary|SOX-TCF_HMG-box; 0.0
4 fp_D P48436 264 RQPPIDFRDVDIGE                CCCCCCCCCCCCCC c2-4 uniq 0.93 0.962 0.847 DISO 0.0
5 fp_D P48436 278 LSSDVISNIETFDVNE                  CCCCCCCCCCCCCCCC c1a-4 multi-selected 0.931 0.952 0.669 DISO 0.0
6 fp_D P48436 279 SSDVISNIETFDVNE                 CCCCCCCCCCCCCCC c1b-4 multi 0.93 0.953 0.67 DISO 0.0
7 fp_D P48436 287 ETFDVNEFDQYLPPNG                  CCCCCCCCCCCCCCCC c1aR-4 uniq 0.951 0.953 0.774 DISO 0.0

*candidates: NES candidates and false positives annotated with "cand" and "fp", respectively;
                if the segment is located in the disordered or boundary region, flagged with "D"; if the segment is located in the ordered region, flagged with "O";
                if the segment's beta-strand content is over 0.5, flagged with "beta".
*sequence: Hydrophobic positions are colored in red. The positions with the experimental evidence is marked with '*' (mutation) and '+' (functional sequence in NESdb or sites in validNES).
                The positions with '.' are for the region annotated in the long (more than 25 residues) functional sequence or site.
*multi-pattern: the consensus pattern is unique or multiple within the region (if the start# difference is less than 5, the segments are considered to be the same region)
*diso: average DISOPRED3-predicted disorder propensity for the segment
*spotd: average SPOT-Disorder-predicted disorder propensity for the segment
*iup: average IUPRED2A-predicted disorder propensity for the segment
*loc_DISO: location of the segment with respect to the ordered/disordered regions
*loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
*beta: beta-strand content in the middle of the segment