P54824 | ATP-dependent RNA helicase ddx6   proviz   swissmodel

*Experimental: mutation (blue); functional region (cyan); located in the long functional sequence (lightblue)
*NES patterns: region with experimental evidence (red-orange-yellow); false positive region (gray)


# candidates id start# sequence secondary class multi-pattern diso spotd iup loc_DISO loc_CDD beta
1 fp_D P54824 102 LKRELLMGIFEMGW .............. CCHHHHHHHHHHCC c2-4 uniq 0.016 0.072 0.247 boundary MID|SrmB; 0.0
2 cand_D P54824 146 SGAYLIPLLERLDLKK ...........*.*.. CHHHHHHHHHHCCCCC c1a-4 multi-selected 0.028 0.032 0.142 boundary MID|SrmB; 0.0
3 cand_D P54824 146 SGAYLIPLLERLDLKK ...........*.*.. CHHHHHHHHHHCCCCC c1d-4 multi 0.028 0.032 0.142 boundary MID|SrmB; 0.0
4 cand_D P54824 147 GAYLIPLLERLDLKK ..........*.*.. HHHHHHHHHHCCCCC c1b-4 multi 0.025 0.03 0.135 boundary MID|SrmB; 0.0
5 cand_D P54824 150 LIPLLERLDLKK .......*.*.. HHHHHHHCCCCC c2-rev multi-selected 0.02 0.03 0.109 boundary MID|SrmB; 0.0
6 fp_O P54824 164 IQAMVIVPTRELALQV .                EEEEEECCCHHHHHHH c1a-AT-4 multi-selected 0.027 0.014 0.099 ORD MID|SrmB; 0.286
7 fp_O P54824 165 QAMVIVPTRELALQV                 EEEEECCCHHHHHHH c1b-AT-4 multi 0.028 0.014 0.094 ORD MID|SrmB; 0.143
8 fp_O P54824 166 AMVIVPTRELALQV                EEEECCCHHHHHHH c2-AT-5 multi 0.029 0.014 0.089 ORD MID|SrmB; 0.143
9 fp_O P54824 171 PTRELALQVSQICIQV                  CCHHHHHHHHHHHHHH c1a-4 multi-selected 0.029 0.015 0.103 ORD MID|SrmB; 0.0
10 fp_O P54824 172 TRELALQVSQICIQV                 CHHHHHHHHHHHHHH c1b-AT-4 multi 0.029 0.015 0.1 ORD MID|SrmB; 0.0
11 fp_O P54824 173 RELALQVSQICIQV                HHHHHHHHHHHHHH c2-4 multi-selected 0.03 0.015 0.101 ORD MID|SrmB; 0.0
12 fp_O P54824 175 LALQVSQICIQVSKHM                  HHHHHHHHHHHHHCCC c1aR-4 multi-selected 0.026 0.016 0.123 ORD MID|SrmB; 0.0
13 fp_O P54824 204 LRDDIMRLDDTVHVVI                  HHHHHHHHCCCCEEEE c1d-4 multi 0.019 0.023 0.201 ORD MID|SrmB; 0.0
14 fp_O P54824 207 DIMRLDDTVHVVIA                HHHHHCCCCEEEEC c3-4 multi-selected 0.019 0.019 0.163 ORD MID|SrmB; 0.143
15 fp_O P54824 207 DIMRLDDTVHVVIAT                 HHHHHCCCCEEEECC c1b-AT-5 multi 0.019 0.019 0.157 ORD MID|SrmB; 0.286
16 fp_O P54824 207 DIMRLDDTVHVVIATPG                   HHHHHCCCCEEEECCCH c1cR-4 multi 0.018 0.018 0.149 ORD MID|SrmB; 0.375
17 fp_O P54824 217 VVIATPGRILDLIK                EEECCCHHHHHHHC c3-AT uniq 0.01 0.014 0.073 ORD MID|SrmB; 0.0
18 fp_O P54824 225 ILDLIKKGVAKVDH                HHHHHCCCCCCCCC c3-4 multi-selected 0.01 0.029 0.059 ORD MID|SrmB; 0.0
19 fp_O P54824 229 IKKGVAKVDHIQMIV                 HCCCCCCCCCCCEEE c1b-4 multi 0.01 0.03 0.064 ORD MID|SrmB; 0.0
20 fp_O P54824 230 KKGVAKVDHIQMIV                CCCCCCCCCCCEEE c2-AT-4 multi 0.01 0.031 0.064 ORD MID|SrmB; 0.0
21 fp_O P54824 232 GVAKVDHIQMIVLDE                 CCCCCCCCCEEEEEC c1b-5 multi 0.017 0.029 0.057 ORD MID|SrmB; 0.286
22 fp_O P54824 251 LSQDFMQIMEDIIMTL                  CCCCHHHHHHHHHHHC c1a-4 multi-selected 0.044 0.026 0.064 ORD MID|SrmB; 0.0
23 fp_O P54824 251 LSQDFMQIMEDIIMTL                  CCCCHHHHHHHHHHHC c1d-4 multi 0.044 0.026 0.064 ORD MID|SrmB; 0.0
24 fp_O P54824 252 SQDFMQIMEDIIMTL                 CCCHHHHHHHHHHHC c1b-4 multi 0.036 0.024 0.064 ORD MID|SrmB; 0.0
25 fp_O P54824 254 DFMQIMEDIIMTLPKNR                   CHHHHHHHHHHHCCCCC c1cR-4 multi 0.021 0.02 0.063 ORD MID|SrmB; 0.0
26 fp_O P54824 255 FMQIMEDIIMTLPK                HHHHHHHHHHHCCC c3-4 multi-selected 0.018 0.019 0.066 ORD MID|SrmB; 0.0
27 fp_O P54824 275 YSATFPLSVQKFMTLHL                   EECCCCHHHHHHHHHHC c1c-4 multi-selected 0.01 0.031 0.052 ORD MID|SrmB; 0.0
28 fp_O P54824 279 FPLSVQKFMTLHLQK                 CCHHHHHHHHHHCCC c1b-4 multi 0.01 0.035 0.056 ORD MID|SrmB; 0.0
29 fp_O P54824 293 KPYEINLMEELTLKG                 CCEEEECCCCCCCCC c1b-4 uniq 0.011 0.039 0.075 ORD MID|SrmB; 0.286
30 fp_O P54824 320 KVHCLNTLFSRLQINQ                  HHHHHHHHHHHCCCCC c1a-5 multi-selected 0.02 0.013 0.042 ORD MID|SrmB; 0.0
31 fp_O P54824 320 KVHCLNTLFSRLQINQ                  HHHHHHHHHHHCCCCC c1d-5 multi 0.02 0.013 0.042 ORD MID|SrmB; 0.0
32 fp_O P54824 322 HCLNTLFSRLQINQ                HHHHHHHHHCCCCC c2-AT-4 multi 0.019 0.013 0.044 ORD MID|SrmB; 0.0
33 fp_D P54824 345 RVELLAKKISQLGY                HHHHHHHHHHHCCC c3-4 uniq 0.025 0.032 0.028 boundary MID|SrmB; 0.0
34 fp_D P54824 386 NLVCTDLFTRGIDIQA                  EEEEECCCCCCCCCCC c1d-AT-5 multi 0.01 0.021 0.034 boundary MID|SrmB; 0.143
35 fp_D P54824 388 VCTDLFTRGIDIQA                EEECCCCCCCCCCC c2-AT-4 multi 0.01 0.022 0.033 boundary MID|SrmB; 0.0
36 fp_D P54824 393 FTRGIDIQAVNVVI                CCCCCCCCCEEEEE c2-4 multi-selected 0.009 0.023 0.033 boundary MID|SrmB; 0.143
37 fp_D P54824 393 FTRGIDIQAVNVVINF                  CCCCCCCCCEEEEEEC c1a-AT-4 multi 0.009 0.022 0.033 boundary MID|SrmB; 0.286
38 fp_beta_D P54824 395 RGIDIQAVNVVINFDF                  CCCCCCCEEEEEECCC c1d-4 multi 0.009 0.021 0.034 boundary MID|SrmB; 0.571
39 fp_D P54824 395 RGIDIQAVNVVINF                CCCCCCCEEEEEEC c2-AT-4 multi 0.009 0.022 0.033 boundary MID|SrmB; 0.429
40 fp_beta_D P54824 397 IDIQAVNVVINFDFPK                  CCCCCEEEEEECCCCC c1a-AT-4 multi 0.009 0.021 0.034 boundary MID|SrmB; 0.857
41 fp_beta_D P54824 397 IDIQAVNVVINFDFPK                  CCCCCEEEEEECCCCC c1d-AT-4 multi 0.009 0.021 0.034 boundary MID|SrmB; 0.857
42 fp_beta_D P54824 398 DIQAVNVVINFDFPK                 CCCCEEEEEECCCCC c1b-5 multi 0.009 0.02 0.035 boundary MID|SrmB; 0.857
43 fp_D P54824 423 RSGRFGHLGLAINLIT                  CCCCCCCCCEEEEECC c1d-4 multi 0.024 0.067 0.062 boundary MID|SrmB; 0.286
44 fp_beta_D P54824 426 RFGHLGLAINLITY                CCCCCCEEEEECCH c3-4 multi-selected 0.019 0.052 0.054 boundary MID|SrmB; 0.571
45 fp_D P54824 441 DRFNLKSIEEQLGTEI                  HHHHHHHHHHHHCCCC c1aR-4 uniq 0.024 0.058 0.22 boundary MID|SrmB; 0.0
46 fp_D P54824 455 EIKPIPSSIDKNLYVAE                   CCCCCCCCCCCCCCEEC c1c-5 uniq 0.171 0.3 0.294 boundary boundary|SrmB; 0.0

*candidates: NES candidates and false positives annotated with "cand" and "fp", respectively;
                if the segment is located in the disordered or boundary region, flagged with "D"; if the segment is located in the ordered region, flagged with "O";
                if the segment's beta-strand content is over 0.5, flagged with "beta".
*sequence: Hydrophobic positions are colored in red. The positions with the experimental evidence is marked with '*' (mutation) and '+' (functional sequence in NESdb or sites in validNES).
                The positions with '.' are for the region annotated in the long (more than 25 residues) functional sequence or site.
*multi-pattern: the consensus pattern is unique or multiple within the region (if the start# difference is less than 5, the segments are considered to be the same region)
*diso: average DISOPRED3-predicted disorder propensity for the segment
*spotd: average SPOT-Disorder-predicted disorder propensity for the segment
*iup: average IUPRED2A-predicted disorder propensity for the segment
*loc_DISO: location of the segment with respect to the ordered/disordered regions
*loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
*beta: beta-strand content in the middle of the segment