P56524 | Histone deacetylase 4   proviz   swissmodel

*Experimental: mutation (blue); functional region (cyan); located in the long functional sequence (lightblue)
*NES patterns: region with experimental evidence (red-orange-yellow); false positive region (gray)


# candidates id start# sequence secondary class multi-pattern diso spotd iup loc_DISO loc_CDD beta
1 fp_D P56524 45 SAVPMDLRLDHQFSLPV                   CCCCCCCCCCCCCCCCC c1c-4 uniq 0.824 0.953 0.521 DISO 0.0
2 fp_D P56524 162 KESAVASTEVKMKLQE                  CCCCCCCHHHHHHHHH c1d-AT-4 multi 0.776 0.957 0.531 DISO boundary|ClassIIa_HDAC4_Gln-rich-N; 0.0
3 fp_D P56524 167 ASTEVKMKLQEFVLNK                  CCHHHHHHHHHHHHHC c1a-4 multi-selected 0.702 0.93 0.468 DISO boundary|ClassIIa_HDAC4_Gln-rich-N; 0.0
4 fp_D P56524 169 TEVKMKLQEFVLNK                HHHHHHHHHHHHHC c2-4 multi-selected 0.674 0.925 0.445 DISO boundary|ClassIIa_HDAC4_Gln-rich-N; 0.0
5 fp_D P56524 373 AERLTLPALQQRLSLFP                   CCCCCCCCCCCCCCCCC c1c-AT-4 multi 0.922 0.954 0.549 DISO 0.0
6 fp_D P56524 374 ERLTLPALQQRLSLFP                  CCCCCCCCCCCCCCCC c1d-4 multi 0.919 0.954 0.534 DISO 0.0
7 fp_D P56524 377 TLPALQQRLSLFPG                CCCCCCCCCCCCCC c3-4 multi-selected 0.909 0.951 0.488 DISO 0.0
8 fp_D P56524 405 DGGAAHSPLLQHMVLLE                   CCCCCCCCCCCCCCCCC c1c-AT-4 uniq 0.955 0.899 0.593 DISO 0.0
9 fp_D P56524 427 APLVTGLGALPLHA                CCCCCCCCCCCCCC c2-AT-4 multi-selected 0.981 0.904 0.503 DISO 0.0
10 fp_D P56524 432 GLGALPLHAQSLVG                CCCCCCCCCCCCCC c3-AT multi-selected 0.98 0.88 0.495 DISO 0.0
11 fp_D P56524 470 LPQNAQALQHLVIQQ                 CCCCHHHHHCHHCCC c1b-AT-4 uniq 0.981 0.897 0.637 DISO 0.0
12 fp_D P56524 608 YQASMEAAGIPVSF                CCCCCCCCCCCCCC c2-AT-4 uniq 0.925 0.897 0.57 DISO 0.0
13 fp_D P56524 649 KPRFTTGLVYDTLMLKH                   CCCCCCCCCCHHHHHHC c1c-AT-4 multi-selected 0.174 0.457 0.395 DISO boundary|HDAC4; 0.0
14 fp_D P56524 650 PRFTTGLVYDTLMLKH                  CCCCCCCCCHHHHHHC c1d-AT-4 multi 0.141 0.447 0.388 DISO boundary|HDAC4; 0.0
15 fp_D P56524 710 ELQTVHSEAHTLLY                HHHHCCCHHHHHHH c3-AT uniq 0.05 0.356 0.402 DISO MID|HDAC4; 0.0
16 fp_D P56524 734 DSKKLLGSLASVFVRL                  HHHHHHCCCHHHHHHC c1a-4 multi-selected 0.725 0.231 0.147 boundary MID|HDAC4; 0.0
17 fp_D P56524 735 SKKLLGSLASVFVRL                 HHHHHCCCHHHHHHC c1b-4 multi 0.737 0.224 0.13 boundary MID|HDAC4; 0.0
18 fp_D P56524 735 SKKLLGSLASVFVRLPC                   HHHHHCCCHHHHHHCCC c1c-AT-4 multi 0.716 0.216 0.13 boundary MID|HDAC4; 0.0
19 fp_D P56524 738 LLGSLASVFVRLPC                HHCCCHHHHHHCCC c3-4 multi-selected 0.732 0.193 0.104 boundary MID|HDAC4; 0.0
20 fp_D P56524 767 SAGAARLAVGCVVELVF                   HHHHHHHHHHHHHHHHH c1c-AT-4 multi 0.014 0.017 0.073 boundary MID|HDAC4; 0.0
21 fp_D P56524 770 AARLAVGCVVELVFKV                  HHHHHHHHHHHHHHHH c1a-AT-4 multi 0.012 0.014 0.056 boundary MID|HDAC4; 0.0
22 fp_D P56524 771 ARLAVGCVVELVFKVA                  HHHHHHHHHHHHHHHH c1aR-5 multi-selected 0.013 0.014 0.052 __ MID|HDAC4; 0.0
23 fp_D P56524 771 ARLAVGCVVELVFKVAT                   HHHHHHHHHHHHHHHHC c1c-4 multi-selected 0.014 0.015 0.051 __ MID|HDAC4; 0.0
24 fp_D P56524 771 ARLAVGCVVELVFKV                 HHHHHHHHHHHHHHH c1b-4 multi 0.013 0.014 0.053 __ MID|HDAC4; 0.0
25 fp_D P56524 774 AVGCVVELVFKVAT                HHHHHHHHHHHHHC c3-4 multi-selected 0.014 0.014 0.048 boundary MID|HDAC4; 0.0
26 fp_O P56524 782 VFKVATGELKNGFAVVR                   HHHHHCCCCCCCEEEEC c1c-AT-5 multi-selected 0.022 0.018 0.211 ORD MID|HDAC4; 0.0
27 fp_O P56524 783 FKVATGELKNGFAVVR                  HHHHCCCCCCCEEEEC c1d-AT-4 multi 0.022 0.018 0.22 ORD MID|HDAC4; 0.0
28 fp_O P56524 808 TPMGFCYFNSVAVAA                 CCCCCCCCCCHHHHH c1b-4 uniq 0.015 0.024 0.117 ORD MID|HDAC4; 0.0
29 fp_O P56524 814 YFNSVAVAAKLLQQ                CCCCHHHHHHHHHH c3-AT multi 0.015 0.013 0.045 ORD MID|HDAC4; 0.0
30 fp_O P56524 817 SVAVAAKLLQQRLSVSK                   CHHHHHHHHHHHCCCCE c1c-AT-5 multi-selected 0.016 0.013 0.039 ORD MID|HDAC4; 0.0
31 fp_O P56524 818 VAVAAKLLQQRLSVSK                  HHHHHHHHHHHCCCCE c1d-AT-4 multi 0.016 0.013 0.038 ORD MID|HDAC4; 0.0
32 fp_O P56524 825 LQQRLSVSKILIVD                HHHHCCCCEEEEEC c2-4 uniq 0.014 0.011 0.073 ORD MID|HDAC4; 0.286
33 fp_O P56524 878 DEVGTGPGVGFNVNMAF                   CCCCCCCCCCCEEEECC c1c-AT-4 uniq 0.029 0.035 0.337 ORD MID|HDAC4; 0.125
34 fp_O P56524 886 VGFNVNMAFTGGLDPPM                   CCCEEEECCCCCCCCCC c1cR-4 multi-selected 0.019 0.031 0.26 ORD MID|HDAC4; 0.375
35 fp_O P56524 890 VNMAFTGGLDPPMGDAE                   EEECCCCCCCCCCCCHH c1cR-4 multi-selected 0.019 0.03 0.236 ORD MID|HDAC4; 0.0
36 fp_O P56524 904 DAEYLAAFRTVVMPI                 CHHHHHHHHHHHCCC c1b-4 multi-selected 0.01 0.01 0.12 ORD MID|HDAC4; 0.0
37 fp_O P56524 905 AEYLAAFRTVVMPI                HHHHHHHHHHHCCC c2-AT-4 multi-selected 0.01 0.009 0.116 ORD MID|HDAC4; 0.0
38 fp_O P56524 907 YLAAFRTVVMPIAS                HHHHHHHHHCCCCC c2-AT-5 multi-selected 0.01 0.009 0.096 ORD MID|HDAC4; 0.0
39 fp_O P56524 925 DVVLVSSGFDAVEG                CEEEECCCCCCCCC c3-4 uniq 0.014 0.027 0.228 ORD MID|HDAC4; 0.286
40 fp_O P56524 949 SARCFGYLTKQLMGLAG                   CCCHHHHHHHHHHHHCC c1c-AT-4 multi 0.016 0.013 0.083 ORD MID|HDAC4; 0.0
41 fp_O P56524 952 CFGYLTKQLMGLAG                HHHHHHHHHHHHCC c3-4 multi-selected 0.017 0.012 0.07 ORD MID|HDAC4; 0.0
42 fp_D P56524 956 LTKQLMGLAGGRIVLAL                   HHHHHHHHCCCCEEEEE c1c-AT-4 multi 0.016 0.012 0.123 boundary MID|HDAC4; 0.0
43 fp_D P56524 957 TKQLMGLAGGRIVLAL                  HHHHHHHCCCCEEEEE c1d-AT-4 multi 0.016 0.012 0.127 boundary MID|HDAC4; 0.0
44 fp_D P56524 1009 PNANAVRSMEKVMEIHS                   CCHHHHHHHHHHHHHHH c1c-AT-4 multi-selected 0.046 0.05 0.391 boundary MID|HDAC4; 0.0
45 fp_D P56524 1010 NANAVRSMEKVMEIHS                  CHHHHHHHHHHHHHHH c1d-4 multi 0.037 0.048 0.378 boundary MID|HDAC4; 0.0
46 cand_D P56524 1051 EEAETVTAMASLSVGV +++++*++*++*+*+* CHHHHHHHCCCCCCCC c1a-AT-4 multi-selected 0.969 0.868 0.536 DISO boundary|HDAC4; 0.0
47 cand_D P56524 1052 EAETVTAMASLSVGVKP ++++*++*++*+*+*++ HHHHHHHCCCCCCCCCC c1c-AT-4 multi-selected 0.966 0.876 0.558 DISO boundary|HDAC4; 0.0
48 cand_D P56524 1052 EAETVTAMASLSVGV ++++*++*++*+*+* HHHHHHHCCCCCCCC c1b-4 multi 0.968 0.868 0.538 DISO boundary|HDAC4; 0.0
49 cand_D P56524 1053 AETVTAMASLSVGV +++*++*++*+*+* HHHHHHCCCCCCCC c2-AT-4 multi 0.967 0.868 0.545 DISO boundary|HDAC4; 0.0

*candidates: NES candidates and false positives annotated with "cand" and "fp", respectively;
                if the segment is located in the disordered or boundary region, flagged with "D"; if the segment is located in the ordered region, flagged with "O";
                if the segment's beta-strand content is over 0.5, flagged with "beta".
*sequence: Hydrophobic positions are colored in red. The positions with the experimental evidence is marked with '*' (mutation) and '+' (functional sequence in NESdb or sites in validNES).
                The positions with '.' are for the region annotated in the long (more than 25 residues) functional sequence or site.
*multi-pattern: the consensus pattern is unique or multiple within the region (if the start# difference is less than 5, the segments are considered to be the same region)
*diso: average DISOPRED3-predicted disorder propensity for the segment
*spotd: average SPOT-Disorder-predicted disorder propensity for the segment
*iup: average IUPRED2A-predicted disorder propensity for the segment
*loc_DISO: location of the segment with respect to the ordered/disordered regions
*loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
*beta: beta-strand content in the middle of the segment