Q00653 | Nuclear factor NF-kappa-B p100 subunit   proviz   swissmodel

*Experimental: mutation (blue); functional region (cyan); located in the long functional sequence (lightblue)
*NES patterns: region with experimental evidence (red-orange-yellow); false positive region (gray)


# candidates id start# sequence secondary class multi-pattern diso spotd iup loc_DISO loc_CDD beta
1 fp_beta_D Q00653 113 QCSELGICAVSVGP                CCCCCCEEEEEECC c2-4 uniq 0.095 0.035 0.275 boundary MID|RHD-n_NFkB2; 0.571
2 fp_beta_D Q00653 125 GPKDMTAQFNNLGVLH                  CCCCCEEEECCCCEEE c1a-4 multi-selected 0.053 0.024 0.376 boundary MID|RHD-n_NFkB2; 0.571
3 fp_beta_D Q00653 126 PKDMTAQFNNLGVLH                 CCCCEEEECCCCEEE c1b-AT-4 multi 0.055 0.024 0.377 boundary MID|RHD-n_NFkB2; 0.571
4 fp_beta_D Q00653 127 KDMTAQFNNLGVLH                CCCEEEECCCCEEE c2-AT-4 multi 0.058 0.022 0.383 boundary MID|RHD-n_NFkB2; 0.571
5 fp_D Q00653 129 MTAQFNNLGVLHVTK                 CEEEECCCCEEEECC c1b-4 multi 0.073 0.023 0.39 boundary MID|RHD-n_NFkB2; 0.429
6 fp_D Q00653 174 LEQEAKELKKVMDLSI                  HHHHHHHHCCCCCCCC c1d-AT-4 multi 0.211 0.082 0.334 boundary MID|RHD-n_NFkB2; 0.0
7 fp_D Q00653 177 EAKELKKVMDLSIVR                 HHHHHCCCCCCCCEE c1b-4 multi 0.209 0.065 0.262 boundary MID|RHD-n_NFkB2; 0.0
8 fp_D Q00653 180 ELKKVMDLSIVRLRF                 HHCCCCCCCCEEEEE c1b-5 multi 0.186 0.044 0.191 boundary MID|RHD-n_NFkB2; 0.143
9 fp_D Q00653 181 LKKVMDLSIVRLRF                HCCCCCCCCEEEEE c2-4 multi-selected 0.177 0.039 0.177 boundary MID|RHD-n_NFkB2; 0.143
10 fp_D Q00653 181 LKKVMDLSIVRLRFSA                  HCCCCCCCCEEEEEEE c1a-4 multi-selected 0.166 0.035 0.169 boundary MID|RHD-n_NFkB2; 0.286
11 fp_beta_D Q00653 183 KVMDLSIVRLRFSAFL                  CCCCCCCEEEEEEEEE c1aR-5 multi-selected 0.142 0.023 0.139 boundary MID|RHD-n_NFkB2; 0.571
12 fp_D Q00653 183 KVMDLSIVRLRFSA                CCCCCCCEEEEEEE c2-5 multi-selected 0.152 0.025 0.145 boundary MID|RHD-n_NFkB2; 0.429
13 fp_beta_D Q00653 186 DLSIVRLRFSAFLR                CCCCEEEEEEEEEE c3-4 multi-selected 0.126 0.013 0.113 boundary MID|RHD-n_NFkB2; 0.857
14 fp_D Q00653 229 KISRMDKTAGSVRG                EEEECCCCCCCCCC c3-AT uniq 0.089 0.042 0.464 boundary boundary|RHD-n_NFkB2; boundary|IPT_NFkappaB; 0.143
15 fp_beta_D Q00653 295 HKMKIERPVTVFLQLKR                   CCCCCCCCEEEEEEEEE c1c-4 uniq 0.065 0.038 0.347 boundary boundary|IPT_NFkappaB; 0.5
16 fp_D Q00653 493 HLAIIHGQTSVIEQ                CHHHHHCCHHHHHH c3-AT multi-selected 0.018 0.036 0.222 boundary boundary|ANK; 0.0
17 fp_D Q00653 497 IHGQTSVIEQIVYVIH                  HHCCHHHHHHHHHHHH c1d-AT-4 multi 0.013 0.033 0.128 boundary boundary|ANK; 0.0
18 fp_D Q00653 506 QIVYVIHHAQDLGVVN                  HHHHHHHHCCCCCCCC c1a-AT-5 multi-selected 0.014 0.035 0.159 boundary MID|ANK; 0.0
19 fp_D Q00653 507 IVYVIHHAQDLGVVN                 HHHHHHHCCCCCCCC c1b-AT-5 multi 0.015 0.036 0.16 boundary MID|ANK; 0.0
20 fp_O Q00653 510 VIHHAQDLGVVNLTN                 HHHHCCCCCCCCCCC c1b-AT-5 multi 0.019 0.036 0.202 ORD MID|ANK; 0.0
21 fp_O Q00653 515 QDLGVVNLTNHLHQTP                  CCCCCCCCCCCCCCCH c1aR-4 multi-selected 0.031 0.031 0.25 ORD MID|ANK; 0.0
22 fp_O Q00653 525 HLHQTPLHLAVITG                CCCCCHHHHHHHCC c3-AT uniq 0.075 0.019 0.229 ORD MID|ANK; 0.0
23 fp_O Q00653 532 HLAVITGQTSVVSFLL                  HHHHHCCCHHHHHHHH c1a-AT-5 multi-selected 0.054 0.018 0.136 ORD MID|ANK; 0.0
24 fp_O Q00653 536 ITGQTSVVSFLLRVGA                  HCCCHHHHHHHHHCCC c1d-AT-4 multi 0.028 0.024 0.104 ORD MID|ANK; 0.0
25 fp_O Q00653 536 ITGQTSVVSFLLRV                HCCCHHHHHHHHHC c2-AT-4 multi 0.029 0.021 0.098 ORD MID|ANK; 0.0
26 fp_D Q00653 636 TALHLATEMEELGLVT                  CCHHHHHHCCCHHHHH c1a-4 multi-selected 0.08 0.058 0.449 boundary boundary|ANK; MID|ANK; 0.0
27 fp_D Q00653 637 ALHLATEMEELGLVT                 CHHHHHHCCCHHHHH c1b-AT-5 multi 0.075 0.056 0.434 boundary boundary|ANK; MID|ANK; 0.0
28 fp_D Q00653 638 LHLATEMEELGLVT                HHHHHHCCCHHHHH c2-AT-4 multi 0.069 0.055 0.418 boundary boundary|ANK; MID|ANK; 0.0
29 fp_D Q00653 643 EMEELGLVTHLVTK                HCCCHHHHHHHHHH c3-AT multi 0.037 0.045 0.355 boundary boundary|ANK; MID|ANK; 0.0
30 fp_D Q00653 646 ELGLVTHLVTKLRA                CHHHHHHHHHHHCC c3-4 multi-selected 0.027 0.042 0.337 boundary boundary|ANK; MID|ANK; 0.0
31 fp_D Q00653 674 LAAGLGYPTLTRLLLKA                   HHHCCCCHHHHHHHHHC c1c-AT-4 uniq 0.01 0.074 0.346 boundary boundary|ANK; 0.0
32 fp_D Q00653 736 LTCSTKVKTLLLNA                CCCCHHHHHHHHHC c2-AT-4 uniq 0.306 0.347 0.412 DISO boundary|ANK; 0.0
33 cand_D Q00653 827 DLAGLLEALSDMGLEE     **     * *   CHHHHHHHHHHCCCHH c1a-5 multi-selected 0.034 0.189 0.482 DISO boundary|Death_NFkB2_p100; 0.0
34 cand_D Q00653 827 DLAGLLEALSDMGLEE     **     * *   CHHHHHHHHHHCCCHH c1d-AT-5 multi 0.034 0.189 0.482 DISO boundary|Death_NFkB2_p100; 0.0
35 cand_D Q00653 828 LAGLLEALSDMGLEE    **     * *   HHHHHHHHHHCCCHH c1b-4 multi 0.032 0.192 0.488 DISO boundary|Death_NFkB2_p100; 0.0

*candidates: NES candidates and false positives annotated with "cand" and "fp", respectively;
                if the segment is located in the disordered or boundary region, flagged with "D"; if the segment is located in the ordered region, flagged with "O";
                if the segment's beta-strand content is over 0.5, flagged with "beta".
*sequence: Hydrophobic positions are colored in red. The positions with the experimental evidence is marked with '*' (mutation) and '+' (functional sequence in NESdb or sites in validNES).
                The positions with '.' are for the region annotated in the long (more than 25 residues) functional sequence or site.
*multi-pattern: the consensus pattern is unique or multiple within the region (if the start# difference is less than 5, the segments are considered to be the same region)
*diso: average DISOPRED3-predicted disorder propensity for the segment
*spotd: average SPOT-Disorder-predicted disorder propensity for the segment
*iup: average IUPRED2A-predicted disorder propensity for the segment
*loc_DISO: location of the segment with respect to the ordered/disordered regions
*loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
*beta: beta-strand content in the middle of the segment