Q02880 | DNA topoisomerase 2-beta   proviz   swissmodel

*Experimental: mutation (blue); functional region (cyan); located in the long functional sequence (lightblue)
*NES patterns: region with experimental evidence (red-orange-yellow); false positive region (gray)


# candidates id start# sequence secondary class multi-pattern diso spotd iup loc_DISO loc_CDD beta
1 fp_D Q02880 55 YQKKTQLEHILLRP                HHHCCCCHHHHCCC c2-AT-4 uniq 0.846 0.196 0.248 DISO boundary|PTZ00108; 0.0
2 fp_D Q02880 98 FVPGLYKIFDEILVNA                  CCCCCCCCHHHHHHHH c1a-5 multi-selected 0.355 0.013 0.123 boundary MID|PTZ00108; 0.0
3 fp_D Q02880 98 FVPGLYKIFDEILVNA                  CCCCCCCCHHHHHHHH c1d-5 multi 0.355 0.013 0.123 boundary MID|PTZ00108; 0.0
4 fp_D Q02880 145 GIPVVEHKVEKVYVPA                  CCCEEECCCCCCCCCE c1a-5 uniq 0.688 0.016 0.132 boundary MID|PTZ00108; 0.286
5 fp_D Q02880 152 KVEKVYVPALIFGQ                CCCCCCCCEEEEEE c3-AT uniq 0.594 0.013 0.082 boundary MID|PTZ00108; 0.286
6 fp_D Q02880 186 YGAKLCNIFSTKFTVET                   CCCHHHHHCCCEEEEEE c1c-4 uniq 0.096 0.014 0.104 boundary MID|PTZ00108; 0.125
7 fp_D Q02880 236 TCITFQPDLSKFKMEK                  EEEEEEECCCCCCCCC c1a-4 uniq 0.072 0.026 0.121 boundary MID|PTZ00108; 0.429
8 fp_D Q02880 245 SKFKMEKLDKDIVALM                  CCCCCCCCCHHHHHHH c1aR-5 multi-selected 0.072 0.029 0.129 __ MID|PTZ00108; 0.0
9 fp_D Q02880 248 KMEKLDKDIVALMT                CCCCCCHHHHHHHH c3-4 multi-selected 0.065 0.026 0.131 boundary MID|PTZ00108; 0.0
10 fp_O Q02880 256 IVALMTRRAYDLAG                HHHHHHHHHHHHHC c3-AT uniq 0.024 0.01 0.111 ORD MID|PTZ00108; 0.0
11 fp_D Q02880 281 KKLPVNGFRSYVDLYV                  EECCCCCHHHHHHHHH c1d-4 uniq 0.046 0.043 0.085 boundary MID|PTZ00108; 0.0
12 fp_D Q02880 296 VKDKLDETGVALKVIH                  HCCCCCCCCCCCEEEE c1d-AT-4 multi 0.147 0.094 0.118 boundary MID|PTZ00108; 0.0
13 fp_D Q02880 299 KLDETGVALKVIHE                CCCCCCCCCEEEEE c3-AT multi-selected 0.151 0.094 0.125 boundary MID|PTZ00108; 0.143
14 fp_D Q02880 347 VDYVVDQVVGKLIEVVK                   HHHHHHHHHHHHHHHHH c1c-4 multi-selected 0.045 0.021 0.117 boundary MID|PTZ00108; 0.0
15 fp_D Q02880 350 VVDQVVGKLIEVVK                HHHHHHHHHHHHHH c3-4 multi-selected 0.045 0.021 0.108 boundary MID|PTZ00108; 0.0
16 fp_beta_D Q02880 373 KPFQVKNHIWVFINCLI                   CCHHHCCCEEEEEEEEE c1cR-5 uniq 0.066 0.021 0.065 boundary MID|PTZ00108; 0.5
17 fp_D Q02880 390 ENPTFDSQTKENMTLQP                   CCCCCCCCCCCCCCCCC c1c-AT-4 uniq 0.696 0.172 0.317 boundary MID|PTZ00108; 0.0
18 fp_D Q02880 485 SAKSLAVSGLGVIG                CHHHHHHCCCCCCC c2-4 uniq 0.477 0.063 0.151 DISO MID|PTZ00108; 0.0
19 fp_D Q02880 503 GVFPLRGKILNVRE                EECCCCCCCCEECC c3-4 uniq 0.568 0.034 0.169 boundary MID|PTZ00108; 0.0
20 fp_D Q02880 524 ENAEINNIIKIVGLQY                  HHHHHHHHHHHHCCCC c1a-4 multi-selected 0.131 0.044 0.146 boundary MID|PTZ00108; 0.0
21 fp_D Q02880 524 ENAEINNIIKIVGLQY                  HHHHHHHHHHHHCCCC c1d-4 multi 0.131 0.044 0.146 boundary MID|PTZ00108; 0.0
22 fp_D Q02880 764 KVAQLAGSVAEMSA                EEEEEHHHHHHHCC c3-4 uniq 0.593 0.056 0.267 boundary MID|PTZ00108; 0.286
23 fp_D Q02880 780 HGEQALMMTIVNLAQ                 CHHHHHHHHHHHHHH c1b-AT-4 multi 0.586 0.03 0.143 DISO MID|PTZ00108; 0.0
24 fp_D Q02880 781 GEQALMMTIVNLAQ                HHHHHHHHHHHHHH c2-4 multi-selected 0.589 0.028 0.141 DISO MID|PTZ00108; 0.0
25 fp_D Q02880 785 LMMTIVNLAQNFVG                HHHHHHHHHHCCCC c3-AT multi 0.479 0.026 0.119 DISO MID|PTZ00108; 0.0
26 fp_D Q02880 785 LMMTIVNLAQNFVGSN                  HHHHHHHHHHCCCCCC c1aR-4 multi-selected 0.451 0.027 0.12 DISO MID|PTZ00108; 0.0
27 fp_D Q02880 826 YIFTMLSTLARLLFPA                  CCCCCCHHHHHCCCCC c1a-5 multi-selected 0.122 0.014 0.058 boundary MID|PTZ00108; 0.0
28 fp_D Q02880 826 YIFTMLSTLARLLFPA                  CCCCCCHHHHHCCCCC c1d-AT-5 multi 0.122 0.014 0.058 boundary MID|PTZ00108; 0.0
29 fp_D Q02880 826 YIFTMLSTLARLLFPAV                   CCCCCCHHHHHCCCCCC c1cR-4 multi 0.116 0.015 0.056 boundary MID|PTZ00108; 0.0
30 fp_D Q02880 827 IFTMLSTLARLLFPA                 CCCCCHHHHHCCCCC c1b-5 multi 0.103 0.014 0.047 boundary MID|PTZ00108; 0.0
31 fp_D Q02880 827 IFTMLSTLARLLFP                CCCCCHHHHHCCCC c3-AT multi 0.109 0.014 0.049 boundary MID|PTZ00108; 0.0
32 fp_D Q02880 838 LFPAVDDNLLKFLY                CCCCCCCCCCCCCC c3-4 uniq 0.044 0.026 0.083 boundary MID|PTZ00108; 0.0
33 fp_beta_D Q02880 862 YIPIIPMVLING              ECCCCCEEEECC c2-rev uniq 0.354 0.013 0.074 boundary MID|PTZ00108; 0.5
34 fp_D Q02880 893 IVNNVRRMLDGLDP                HHHHHHHHHCCCCC c3-4 uniq 0.119 0.03 0.321 boundary MID|PTZ00108; 0.0
35 fp_beta_D Q02880 933 EIFVVDRNTVEITE                EEEEEECCEEEEEE c3-AT uniq 0.051 0.012 0.165 boundary MID|PTZ00108; 0.714
36 fp_beta_D Q02880 979 KEYHTDTTVKFVVKMTE                   CCCCCCCEEEEEEEECH c1c-AT-4 uniq 0.037 0.037 0.224 boundary MID|PTZ00108; 0.625
37 fp_D Q02880 999 AQAEAAGLHKVFKLQT                  HHHHHHCHHHHHCCCC c1d-AT-4 uniq 0.298 0.045 0.172 boundary MID|PTZ00108; 0.0
38 cand_D Q02880 1032 KYETVQDILKEFFDLRL   +**++++++++++++ CCCCHHHHHHHHHHHHH c1c-4 multi 0.114 0.014 0.075 boundary MID|PTZ00108; 0.0
39 cand_D Q02880 1035 TVQDILKEFFDLRLSY **+++++++++++++  CHHHHHHHHHHHHHHH c1a-5 multi-selected 0.151 0.012 0.067 boundary MID|PTZ00108; 0.0
40 cand_D Q02880 1036 VQDILKEFFDLRLSY *+++++++++++++  HHHHHHHHHHHHHHH c1b-4 multi 0.159 0.011 0.061 boundary MID|PTZ00108; 0.0
41 fp_D Q02880 1072 QARFILEKIQGKITIEN                   HHHHHHHHHCCCEEECC c1c-4 multi-selected 0.052 0.048 0.265 boundary MID|PTZ00108; 0.0
42 fp_D Q02880 1073 ARFILEKIQGKITIEN                  HHHHHHHHCCCEEECC c1aR-4 multi-selected 0.054 0.049 0.264 boundary MID|PTZ00108; 0.0
43 fp_D Q02880 1073 ARFILEKIQGKITIEN                  HHHHHHHHCCCEEECC c1d-4 multi 0.054 0.049 0.264 boundary MID|PTZ00108; 0.0
44 fp_D Q02880 1139 SGPDFNYILNMSLWS                 CCCCCCHHCCCCCCC c1b-4 uniq 0.274 0.146 0.353 DISO MID|PTZ00108; 0.0
45 fp_D Q02880 1188 DLAAFVEELDKVES                HHHHHHHHHHHHHH c3-4 uniq 0.109 0.196 0.431 DISO MID|PTZ00108; 0.0
46 fp_D Q02880 1261 KKGDLDTAAVKVEFDE                  CCCCCCCCCCCCCCCC c1a-AT-4 multi-selected 0.987 0.961 0.479 DISO MID|PTZ00108; 0.0
47 fp_D Q02880 1261 KKGDLDTAAVKVEFDE                  CCCCCCCCCCCCCCCC c1d-AT-4 multi 0.987 0.961 0.479 DISO MID|PTZ00108; 0.0
48 fp_D Q02880 1261 KKGDLDTAAVKVEF                CCCCCCCCCCCCCC c2-AT-4 multi 0.988 0.962 0.475 DISO MID|PTZ00108; 0.0

*candidates: NES candidates and false positives annotated with "cand" and "fp", respectively;
                if the segment is located in the disordered or boundary region, flagged with "D"; if the segment is located in the ordered region, flagged with "O";
                if the segment's beta-strand content is over 0.5, flagged with "beta".
*sequence: Hydrophobic positions are colored in red. The positions with the experimental evidence is marked with '*' (mutation) and '+' (functional sequence in NESdb or sites in validNES).
                The positions with '.' are for the region annotated in the long (more than 25 residues) functional sequence or site.
*multi-pattern: the consensus pattern is unique or multiple within the region (if the start# difference is less than 5, the segments are considered to be the same region)
*diso: average DISOPRED3-predicted disorder propensity for the segment
*spotd: average SPOT-Disorder-predicted disorder propensity for the segment
*iup: average IUPRED2A-predicted disorder propensity for the segment
*loc_DISO: location of the segment with respect to the ordered/disordered regions
*loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
*beta: beta-strand content in the middle of the segment