Q04206 | Transcription factor p65   proviz   swissmodel

*Experimental: mutation (blue); functional region (cyan); located in the long functional sequence (lightblue)
*NES patterns: region with experimental evidence (red-orange-yellow); false positive region (gray)


# candidates id start# sequence secondary class multi-pattern diso spotd iup loc_DISO loc_CDD beta
1 fp_beta_D Q04206 106 PDRCIHSFQNLGIQC                 CCCCEEEEEEEEEEE c1b-4 uniq 0.071 0.048 0.167 boundary MID|RHD-n_RelA; 1.0
2 fp_beta_D Q04206 150 GDYDLNAVRLCFQV                CCCCCCEEEEEEEE c2-AT-4 multi-selected 0.315 0.08 0.22 DISO MID|RHD-n_RelA; 0.571
3 fp_beta_D Q04206 150 GDYDLNAVRLCFQVTV                  CCCCCCEEEEEEEEEE c1d-4 multi-selected 0.292 0.072 0.221 DISO MID|RHD-n_RelA; 0.714
4 fp_beta_D Q04206 152 YDLNAVRLCFQVTVRD                  CCCCEEEEEEEEEEEC c1d-AT-4 multi 0.261 0.039 0.229 DISO boundary|RHD-n_RelA; 1.0
5 fp_beta_D Q04206 258 ADPSLQAPVRVSMQLRR                   CCCCCCCCEEEEEEEEE c1c-4 uniq 0.029 0.052 0.55 boundary boundary|IPT_NFkappaB; 0.5
6 cand_D Q04206 432 GEGTLSEALLQLQFDD     ++++*++*++   CCCCCHHHHCCCCCCC c1a-4 multi-selected 0.959 0.927 0.627 DISO 0.0
7 cand_D Q04206 432 GEGTLSEALLQLQFDD     ++++*++*++   CCCCCHHHHCCCCCCC c1d-AT-4 multi 0.959 0.927 0.627 DISO 0.0
8 fp_D Q04206 530 GDEDFSSIADMDFSA                 CCCCCCCCCCCCHHH c1b-4 uniq 0.943 0.703 0.362 DISO 0.0

*candidates: NES candidates and false positives annotated with "cand" and "fp", respectively;
                if the segment is located in the disordered or boundary region, flagged with "D"; if the segment is located in the ordered region, flagged with "O";
                if the segment's beta-strand content is over 0.5, flagged with "beta".
*sequence: Hydrophobic positions are colored in red. The positions with the experimental evidence is marked with '*' (mutation) and '+' (functional sequence in NESdb or sites in validNES).
                The positions with '.' are for the region annotated in the long (more than 25 residues) functional sequence or site.
*multi-pattern: the consensus pattern is unique or multiple within the region (if the start# difference is less than 5, the segments are considered to be the same region)
*diso: average DISOPRED3-predicted disorder propensity for the segment
*spotd: average SPOT-Disorder-predicted disorder propensity for the segment
*iup: average IUPRED2A-predicted disorder propensity for the segment
*loc_DISO: location of the segment with respect to the ordered/disordered regions
*loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
*beta: beta-strand content in the middle of the segment