Q04377 | DNA damage checkpoint protein LCD1   proviz   swissmodel

*Experimental: mutation (blue); functional region (cyan); located in the long functional sequence (lightblue)
*NES patterns: region with experimental evidence (red-orange-yellow); false positive region (gray)


# candidates id start# sequence secondary class multi-pattern diso spotd iup loc_DISO loc_CDD beta
1 fp_D Q04377 71 AQGEASMLRDKINFLN                  HHCHHHHHHHHHHHHH c1d-AT-4 multi 0.135 0.684 0.512 DISO boundary|LCD1; 0.0
2 fp_D Q04377 74 EASMLRDKINFLNIER                  HHHHHHHHHHHHHHHH c1a-4 multi-selected 0.166 0.68 0.488 DISO boundary|LCD1; 0.0
3 fp_D Q04377 93 KNIQAVKVNELQVKH                 HHHHHHHHHHHHHHH c1b-AT-4 multi 0.286 0.777 0.457 DISO boundary|LCD1; 0.0
4 fp_D Q04377 94 NIQAVKVNELQVKH                HHHHHHHHHHHHHH c2-5 multi-selected 0.281 0.782 0.458 DISO boundary|LCD1; 0.0
5 fp_D Q04377 110 ELAKLKQELQKLED                HHHHHHHHHHHHHH c3-4 uniq 0.118 0.785 0.438 DISO MID|LCD1; 0.0
6 fp_D Q04377 199 IPDETSLFLESILLHQ                  CCCCHHHHHHHHHHCC c1a-AT-4 multi 0.019 0.064 0.103 boundary MID|LCD1; 0.0
7 fp_D Q04377 199 IPDETSLFLESILLHQ                  CCCCHHHHHHHHHHCC c1d-AT-4 multi 0.019 0.064 0.103 boundary MID|LCD1; 0.0
8 fp_D Q04377 201 DETSLFLESILLHQ                CCHHHHHHHHHHCC c2-4 multi-selected 0.016 0.056 0.081 boundary MID|LCD1; 0.0
9 fp_D Q04377 212 LHQIIGADLSTIEILN                  HCCCCCCCCCHHHHHH c1a-4 multi-selected 0.01 0.042 0.038 boundary MID|LCD1; 0.0
10 fp_D Q04377 214 QIIGADLSTIEILN                CCCCCCCCHHHHHH c2-AT-5 multi 0.01 0.041 0.037 __ MID|LCD1; 0.0
11 fp_O Q04377 218 ADLSTIEILNRLKLDY                  CCCCHHHHHHCCCCCC c1a-AT-4 multi-selected 0.01 0.04 0.037 ORD MID|LCD1; 0.0
12 fp_O Q04377 218 ADLSTIEILNRLKLDY                  CCCCHHHHHHCCCCCC c1d-AT-4 multi 0.01 0.04 0.037 ORD MID|LCD1; 0.0
13 fp_O Q04377 219 DLSTIEILNRLKLDY                 CCCHHHHHHCCCCCC c1b-5 multi 0.01 0.039 0.035 ORD MID|LCD1; 0.0
14 fp_O Q04377 227 NRLKLDYITEFKFKN                 HCCCCCCCCCCCCCC c1b-4 multi 0.016 0.047 0.025 ORD MID|LCD1; 0.0
15 fp_O Q04377 231 LDYITEFKFKNFVIAK                  CCCCCCCCCCCEEECC c1a-AT-4 multi 0.033 0.05 0.027 ORD MID|LCD1; 0.0
16 fp_O Q04377 233 YITEFKFKNFVIAK                CCCCCCCCCEEECC c2-5 multi-selected 0.036 0.05 0.026 ORD MID|LCD1; 0.143
17 fp_O Q04377 246 KGAPIGKSIVSLLLRC                  CCCCCHHHHHHHHHHH c1a-4 uniq 0.053 0.048 0.029 ORD MID|LCD1; 0.0
18 fp_O Q04377 263 KTLTLDRFIDTLLEDI                  CCCCHHHHHHHHHHHH c1aR-4 multi-selected 0.018 0.022 0.013 ORD MID|LCD1; 0.0
19 fp_O Q04377 266 TLDRFIDTLLEDIAVLI                   CHHHHHHHHHHHHHHHH c1c-5 multi-selected 0.021 0.017 0.016 ORD MID|LCD1; 0.0
20 fp_O Q04377 267 LDRFIDTLLEDIAVLI                  HHHHHHHHHHHHHHHH c1a-4 multi-selected 0.021 0.016 0.016 ORD MID|LCD1; 0.0
21 fp_O Q04377 267 LDRFIDTLLEDIAVLI                  HHHHHHHHHHHHHHHH c1d-4 multi 0.021 0.016 0.016 ORD MID|LCD1; 0.0
22 fp_O Q04377 269 RFIDTLLEDIAVLI                HHHHHHHHHHHHHH c2-AT-5 multi 0.021 0.014 0.016 ORD MID|LCD1; 0.0
23 fp_O Q04377 270 FIDTLLEDIAVLIK                HHHHHHHHHHHHHH c3-4 multi 0.021 0.014 0.017 ORD MID|LCD1; 0.0
24 fp_O Q04377 274 LLEDIAVLIKEISVHP                  HHHHHHHHHHHHHCCC c1a-5 multi-selected 0.029 0.022 0.022 ORD MID|LCD1; 0.0
25 fp_O Q04377 274 LLEDIAVLIKEISVHP                  HHHHHHHHHHHHHCCC c1d-5 multi 0.029 0.022 0.022 ORD MID|LCD1; 0.0
26 fp_O Q04377 275 LEDIAVLIKEISVHP                 HHHHHHHHHHHHCCC c1b-AT-4 multi 0.029 0.023 0.023 ORD MID|LCD1; 0.0
27 fp_O Q04377 276 EDIAVLIKEISVHP                HHHHHHHHHHHCCC c2-4 multi 0.03 0.023 0.024 ORD MID|LCD1; 0.0
28 fp_O Q04377 295 AVPFLVALMYQIVQFRP                   CHHHHHHHHHHHCCCCC c1c-5 multi-selected 0.013 0.016 0.01 ORD MID|LCD1; 0.0
29 fp_O Q04377 295 AVPFLVALMYQIVQ                CHHHHHHHHHHHCC c3-4 multi-selected 0.014 0.013 0.009 ORD MID|LCD1; 0.0
30 fp_O Q04377 296 VPFLVALMYQIVQFRP                  HHHHHHHHHHHCCCCC c1aR-4 multi-selected 0.012 0.016 0.01 ORD MID|LCD1; 0.0
31 fp_O Q04377 296 VPFLVALMYQIVQFRP                  HHHHHHHHHHHCCCCC c1d-4 multi 0.012 0.016 0.01 ORD MID|LCD1; 0.0
32 fp_O Q04377 298 FLVALMYQIVQFRP                HHHHHHHHHCCCCC c3-4 multi-selected 0.011 0.016 0.01 ORD MID|LCD1; 0.0
33 fp_O Q04377 305 QIVQFRPSATHNLALKD                   HHCCCCCCCCCHHHHHH c1c-AT-5 uniq 0.017 0.025 0.011 ORD MID|LCD1; 0.0
34 fp_D Q04377 319 LKDCFLFICDLIRIYH                  HHHHHHHHHHHHHHCC c1d-4 uniq 0.021 0.013 0.004 boundary MID|LCD1; 0.0
35 fp_D Q04377 351 EPQIFQYELIDYLIISY                   CCCHHHHHHHHHHHHHH c1c-4 uniq 0.021 0.022 0.009 boundary MID|LCD1; 0.0
36 fp_D Q04377 365 ISYSFDLLEGILRVLQ                  HHHHHHHHHHHHHHHH c1d-4 multi 0.022 0.009 0.013 __ MID|LCD1; 0.0
37 fp_O Q04377 367 YSFDLLEGILRVLQSHP                   HHHHHHHHHHHHHHCCC c1cR-4 multi 0.026 0.015 0.017 ORD MID|LCD1; 0.0
38 fp_O Q04377 368 SFDLLEGILRVLQS                HHHHHHHHHHHHHC c3-4 multi-selected 0.026 0.012 0.015 ORD MID|LCD1; 0.0
39 fp_O Q04377 387 YMEFFDENILKSFEFVY                   HHHHHHHHHHHHHHHHH c1c-5 uniq 0.017 0.025 0.023 ORD MID|LCD1; 0.0
40 fp_O Q04377 395 ILKSFEFVYKLALTI                 HHHHHHHHHHHHHHC c1b-5 multi-selected 0.014 0.027 0.007 ORD MID|LCD1; 0.0
41 fp_D Q04377 397 KSFEFVYKLALTISYKP                   HHHHHHHHHHHHCCCCC c1cR-4 multi-selected 0.015 0.032 0.007 boundary MID|LCD1; 0.0
42 fp_O Q04377 398 SFEFVYKLALTISY                HHHHHHHHHHHCCC c3-AT multi-selected 0.016 0.031 0.007 ORD MID|LCD1; 0.0
43 fp_D Q04377 410 SYKPMVNVIFSAVEVVN                   CCCCCCEEHHHHHHHHH c1c-4 multi-selected 0.014 0.033 0.009 boundary MID|LCD1; 0.25
44 fp_D Q04377 411 YKPMVNVIFSAVEVVN                  CCCCCEEHHHHHHHHH c1a-4 multi 0.013 0.032 0.009 boundary MID|LCD1; 0.286
45 fp_D Q04377 411 YKPMVNVIFSAVEVVN                  CCCCCEEHHHHHHHHH c1d-4 multi 0.013 0.032 0.009 boundary MID|LCD1; 0.286
46 fp_D Q04377 413 PMVNVIFSAVEVVNIIT                   CCCEEHHHHHHHHHHHH c1c-AT-5 multi 0.023 0.03 0.01 boundary MID|LCD1; 0.125
47 fp_D Q04377 413 PMVNVIFSAVEVVN                CCCEEHHHHHHHHH c2-5 multi 0.013 0.029 0.009 boundary MID|LCD1; 0.286
48 fp_D Q04377 413 PMVNVIFSAVEVVN                CCCEEHHHHHHHHH c3-AT multi 0.013 0.029 0.009 boundary MID|LCD1; 0.286
49 fp_D Q04377 414 MVNVIFSAVEVVNIIT                  CCEEHHHHHHHHHHHH c1a-5 multi-selected 0.024 0.029 0.01 boundary MID|LCD1; 0.0
50 fp_D Q04377 414 MVNVIFSAVEVVNIIT                  CCEEHHHHHHHHHHHH c1d-AT-5 multi 0.024 0.029 0.01 boundary MID|LCD1; 0.0
51 fp_D Q04377 415 VNVIFSAVEVVNIIT                 CEEHHHHHHHHHHHH c1b-4 multi 0.025 0.028 0.01 boundary MID|LCD1; 0.0
52 fp_D Q04377 417 VIFSAVEVVNIITS                EHHHHHHHHHHHHH c3-AT multi 0.037 0.029 0.013 boundary MID|LCD1; 0.0
53 fp_D Q04377 420 SAVEVVNIITSIILNM                  HHHHHHHHHHHHHHHC c1a-4 multi-selected 0.122 0.045 0.021 boundary MID|LCD1; 0.0
54 fp_D Q04377 420 SAVEVVNIITSIILNM                  HHHHHHHHHHHHHHHC c1d-4 multi 0.122 0.045 0.021 boundary MID|LCD1; 0.0
55 fp_D Q04377 421 AVEVVNIITSIILNMDN                   HHHHHHHHHHHHHHCCC c1c-AT-5 multi 0.16 0.068 0.023 boundary MID|LCD1; 0.0
56 fp_D Q04377 421 AVEVVNIITSIILNM                 HHHHHHHHHHHHHHC c1b-5 multi 0.13 0.046 0.021 boundary MID|LCD1; 0.0
57 fp_D Q04377 421 AVEVVNIITSIILN                HHHHHHHHHHHHHH c3-AT multi 0.111 0.039 0.021 boundary MID|LCD1; 0.0
58 fp_D Q04377 424 VVNIITSIILNMDN                HHHHHHHHHHHCCC c3-4 multi-selected 0.192 0.078 0.026 boundary MID|LCD1; 0.0
59 fp_D Q04377 471 YNENVDTTTLHMSK                CCCCCCCCCCCCCC c2-AT-4 uniq 0.086 0.082 0.181 boundary MID|LCD1; 0.0
60 fp_D Q04377 544 WLLKLKDEVLNIFE                HHHHHHHHHHHHHH c3-4 multi-selected 0.01 0.017 0.02 boundary MID|LCD1; 0.0
61 fp_D Q04377 548 LKDEVLNIFENLLMIYG                   HHHHHHHHHHHHHHHHC c1c-4 multi-selected 0.013 0.021 0.027 boundary MID|LCD1; 0.0
62 fp_D Q04377 548 LKDEVLNIFENLLMIY                  HHHHHHHHHHHHHHHH c1a-4 multi-selected 0.012 0.019 0.025 boundary MID|LCD1; 0.0
63 fp_D Q04377 548 LKDEVLNIFENLLMIY                  HHHHHHHHHHHHHHHH c1d-4 multi 0.012 0.019 0.025 boundary MID|LCD1; 0.0
64 fp_D Q04377 549 KDEVLNIFENLLMIYG                  HHHHHHHHHHHHHHHC c1d-4 multi 0.013 0.021 0.027 boundary MID|LCD1; 0.0
65 fp_D Q04377 549 KDEVLNIFENLLMIY                 HHHHHHHHHHHHHHH c1b-4 multi 0.012 0.019 0.024 boundary MID|LCD1; 0.0
66 fp_D Q04377 551 EVLNIFENLLMIYG                HHHHHHHHHHHHHC c3-4 multi-selected 0.014 0.022 0.028 boundary MID|LCD1; 0.0
67 fp_O Q04377 563 YGDDATIVNGEMLIHS                  HCCCCCCCCCCHHHHH c1d-AT-4 uniq 0.023 0.056 0.091 ORD MID|LCD1; 0.0
68 fp_O Q04377 607 LIEHTLTIIYRLWK                HHHHHHHHHHHHHH c3-AT uniq 0.015 0.009 0.04 ORD MID|LCD1; 0.0
69 fp_D Q04377 627 REEQIKQVESQLIMSL                  HHHHHHHHHHHHHHHH c1d-4 uniq 0.034 0.023 0.115 boundary MID|LCD1; 0.0
70 cand_D Q04377 662 DHRHLVDSLHDLTIKD ........*..*.... HHHHHCCCCCCCCHHH c1a-4 multi-selected 0.051 0.105 0.28 boundary MID|LCD1; 0.0
71 cand_D Q04377 663 HRHLVDSLHDLTIKD .......*..*.... HHHHCCCCCCCCHHH c1b-4 multi 0.045 0.104 0.269 boundary MID|LCD1; 0.0
72 fp_D Q04377 685 AFEDLPEYIEEELKMQL ................. HHHCCHHHHHHHHHHHH c1c-5 uniq 0.131 0.067 0.268 boundary MID|LCD1; 0.0
73 fp_D Q04377 697 LKMQLNKRTGRIMQVKY ................. HHHHHHHHCCCCCCCCC c1c-AT-4 uniq 0.158 0.075 0.29 boundary MID|LCD1; 0.0
74 fp_D Q04377 731 DLTTLEEADSLYISM ............... CCCCHHHHHHHHHHC c1b-AT-5 multi-selected 0.166 0.097 0.181 boundary boundary|LCD1; 0.0
75 fp_D Q04377 734 TLEEADSLYISMGLXX ..............   CHHHHHHHHHHCCC c1d-AT-5-Ct multi-selected 0.175 0.127 0.172 boundary boundary|LCD1; 0.0

*candidates: NES candidates and false positives annotated with "cand" and "fp", respectively;
                if the segment is located in the disordered or boundary region, flagged with "D"; if the segment is located in the ordered region, flagged with "O";
                if the segment's beta-strand content is over 0.5, flagged with "beta".
*sequence: Hydrophobic positions are colored in red. The positions with the experimental evidence is marked with '*' (mutation) and '+' (functional sequence in NESdb or sites in validNES).
                The positions with '.' are for the region annotated in the long (more than 25 residues) functional sequence or site.
*multi-pattern: the consensus pattern is unique or multiple within the region (if the start# difference is less than 5, the segments are considered to be the same region)
*diso: average DISOPRED3-predicted disorder propensity for the segment
*spotd: average SPOT-Disorder-predicted disorder propensity for the segment
*iup: average IUPRED2A-predicted disorder propensity for the segment
*loc_DISO: location of the segment with respect to the ordered/disordered regions
*loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
*beta: beta-strand content in the middle of the segment