Q06787 | Fragile X mental retardation 1 protein   proviz   swissmodel

*Experimental: mutation (blue); functional region (cyan); located in the long functional sequence (lightblue)
*NES patterns: region with experimental evidence (red-orange-yellow); false positive region (gray)


# candidates id start# sequence secondary class multi-pattern diso spotd iup loc_DISO loc_CDD beta
1 fp_D Q06787 38 PDRQIPFHDVRFPP                CCCCCCCCCEECCC c2-4 uniq 0.324 0.046 0.341 boundary 0.143
2 fp_beta_D Q06787 80 WLAKVRMIKGEFYVIE                  EEEEEEEEECCEEEEE c1d-5 multi 0.01 0.01 0.047 boundary 0.714
3 fp_beta_D Q06787 83 KVRMIKGEFYVIEY                EEEEEECCEEEEEE c3-4 multi-selected 0.01 0.011 0.034 boundary 0.714
4 fp_D Q06787 118 NKPATKDTFHKIKLDV                  CCCCCCCCEEEEEECC c1a-AT-4 uniq 0.073 0.059 0.413 boundary 0.429
5 fp_D Q06787 146 AHKDFKKAVGAFSVTY                  HHHHHHHHHCCEEEEE c1a-4 multi-selected 0.089 0.021 0.207 boundary 0.0
6 fp_D Q06787 146 AHKDFKKAVGAFSVTY                  HHHHHHHHHCCEEEEE c1d-AT-4 multi 0.089 0.021 0.207 boundary 0.0
7 fp_D Q06787 177 TSKRAHMLIDMHFRS                 CHHHHCCCCCCCCCH c1b-AT-4 uniq 0.278 0.209 0.172 boundary 0.0
8 fp_D Q06787 185 IDMHFRSLRTKLSLIM                  CCCCCCHHHHHHHHHH c1aR-5 multi-selected 0.32 0.249 0.207 boundary boundary|KH; 0.0
9 fp_D Q06787 185 IDMHFRSLRTKLSLIM                  CCCCCCHHHHHHHHHH c1d-4 multi 0.32 0.249 0.207 boundary boundary|KH; 0.0
10 fp_D Q06787 188 HFRSLRTKLSLIMR                CCCHHHHHHHHHHH c3-4 multi-selected 0.323 0.261 0.211 DISO boundary|KH; 0.0
11 fp_D Q06787 211 SSRQLASRFHEQFIVRE                   HHHHHCCCCEEEEEECC c1c-4 multi-selected 0.376 0.164 0.267 boundary boundary|KH; 0.375
12 fp_D Q06787 212 SRQLASRFHEQFIVRE                  HHHHCCCCEEEEEECC c1d-AT-4 multi 0.351 0.151 0.249 boundary boundary|KH; 0.429
13 fp_D Q06787 221 EQFIVREDLMGLAIGT                  EEEEECCCHHHHHCCC c1a-4 uniq 0.073 0.057 0.205 boundary boundary|KH; 0.143
14 fp_beta_D Q06787 243 QARKVPGVTAIDLDE                 HHHCCCCEEEEEECC c1b-4 multi 0.13 0.059 0.381 boundary MID|KH; 0.571
15 fp_beta_D Q06787 246 KVPGVTAIDLDE              CCCCEEEEEECC c2-rev multi-selected 0.113 0.049 0.375 boundary MID|KH; 0.833
16 fp_D Q06787 251 TAIDLDEDTCTFHIYG                  EEEEECCCCCEEEEEE c1a-AT-4 multi 0.112 0.031 0.355 boundary boundary|KH; 0.286
17 fp_D Q06787 268 DQDAVKKARSFLEFAE                  CHHHHHHHHHHHHCCE c1d-AT-4 uniq 0.159 0.069 0.286 boundary boundary|KH; 0.0
18 fp_D Q06787 274 KARSFLEFAEDVIQVPR                   HHHHHHHCCEEECCCCC c1c-AT-4 multi 0.284 0.063 0.258 DISO boundary|KH; 0.375
19 fp_D Q06787 275 ARSFLEFAEDVIQVPR                  HHHHHHCCEEECCCCC c1d-AT-4 multi 0.294 0.063 0.255 DISO boundary|KH; 0.429
20 fp_D Q06787 277 SFLEFAEDVIQVPR                HHHHCCEEECCCCC c3-4 multi-selected 0.319 0.061 0.244 DISO boundary|KH; 0.429
21 fp_D Q06787 277 SFLEFAEDVIQVPRNLVG                    HHHHCCEEECCCCCCCCC c4-5 multi-selected 0.357 0.065 0.26 DISO boundary|KH; 0.375
22 fp_D Q06787 367 QPNSTKVQRVLVAS                CCCCCCCEEEEEEC c2-AT-4 uniq 0.869 0.613 0.488 DISO 0.429
23 cand_D Q06787 420 HLNYLKEVDQLRLER       ++++*+*++ HHHHHHHHHHHHHHH c1b-5 uniq 0.505 0.62 0.384 DISO boundary|FXMRP1_C_core; 0.0
24 cand_D Q06787 426 EVDQLRLERLQIDE ++++*+*++*+*++ HHHHHHHHHHHHHH c2-5 uniq 0.714 0.659 0.456 DISO boundary|FXMRP1_C_core; 0.0

*candidates: NES candidates and false positives annotated with "cand" and "fp", respectively;
                if the segment is located in the disordered or boundary region, flagged with "D"; if the segment is located in the ordered region, flagged with "O";
                if the segment's beta-strand content is over 0.5, flagged with "beta".
*sequence: Hydrophobic positions are colored in red. The positions with the experimental evidence is marked with '*' (mutation) and '+' (functional sequence in NESdb or sites in validNES).
                The positions with '.' are for the region annotated in the long (more than 25 residues) functional sequence or site.
*multi-pattern: the consensus pattern is unique or multiple within the region (if the start# difference is less than 5, the segments are considered to be the same region)
*diso: average DISOPRED3-predicted disorder propensity for the segment
*spotd: average SPOT-Disorder-predicted disorder propensity for the segment
*iup: average IUPRED2A-predicted disorder propensity for the segment
*loc_DISO: location of the segment with respect to the ordered/disordered regions
*loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
*beta: beta-strand content in the middle of the segment