Q08358 | Polyprotein pp220 (the section of p37)   proviz   swissmodel

*Experimental: mutation (blue); functional region (cyan); located in the long functional sequence (lightblue)
*NES patterns: region with experimental evidence (red-orange-yellow); false positive region (gray)


# candidates id start# sequence secondary class multi-pattern diso spotd iup loc_DISO loc_CDD beta
1 fp_D Q08358 6 EELGLSKAARSQVDLNQ ..*.*............ HHHCCCHHHHHHCCHHH c1c-AT-4 uniq 0.336 0.367 0.227 boundary 0.0
2 fp_D Q08358 99 ADWKAAVSAIELEY .............. CCHHHHHHHHHHHH c2-AT-4 uniq 0.028 0.102 0.213 boundary 0.0
3 fp_D Q08358 114 VKRRFYRALEGLDLYL ................ HHHHHHHHHCCHHHHH c1a-4 multi-selected 0.01 0.056 0.076 boundary 0.0
4 fp_D Q08358 114 VKRRFYRALEGLDLYL ................ HHHHHHHHHCCHHHHH c1d-AT-4 multi 0.01 0.056 0.076 boundary 0.0
5 fp_O Q08358 121 ALEGLDLYLKNITK .............. HHCCHHHHHHHHHH c3-4 multi-selected 0.01 0.052 0.089 ORD 0.0
6 fp_O Q08358 125 LDLYLKNITKTFVNNI ...............* HHHHHHHHHHHHHCCC c1aR-4 multi-selected 0.01 0.054 0.129 ORD 0.0
7 cand_O Q08358 141 DSIQTVQQMLDGVRIIG ..*..*..*........ CHHHHHHHHHHCEEEEE c1c-AT-4 multi 0.01 0.04 0.195 ORD 0.0
8 fp_O Q08358 142 SIQTVQQMLDGVRIIG .*..*..*........ HHHHHHHHHHCEEEEE c1a-5 multi-selected 0.01 0.039 0.19 ORD 0.0
9 cand_O Q08358 142 SIQTVQQMLDGVRIIG .*..*..*........ HHHHHHHHHHCEEEEE c1d-5 multi 0.01 0.039 0.19 ORD 0.0
10 fp_O Q08358 145 TVQQMLDGVRIIGR .*..*......... HHHHHHHCEEEEEE c3-4 multi 0.01 0.035 0.174 ORD 0.286
11 fp_D Q08358 233 NFQALKNIINAFAR ..             CHHHHHHHHHHHHH c3-4 multi-selected 0.01 0.043 0.086 boundary 0.0
12 fp_D Q08358 236 ALKNIINAFARIGD                HHHHHHHHHHHHHH c3-4 multi-selected 0.01 0.039 0.102 boundary 0.0
13 fp_O Q08358 239 NIINAFARIGDMLG                HHHHHHHHHHHCCC c3-AT multi 0.011 0.043 0.123 ORD 0.0
14 fp_D Q08358 271 LLEYIQHSALSVGLKN                  HHHHHHHHHHHHCCCC c1a-AT-5 uniq 0.018 0.067 0.12 boundary 0.0
15 fp_beta_D Q08358 306 AAQRVYLSTVRVND                HHHHEEEEEEEECC c2-4 uniq 0.024 0.074 0.202 boundary 0.857
16 fp_D Q08358 323 TRWETEDVFFTFMLKS                  CCCCCCHHHHHHHHHH c1a-AT-4 multi 0.014 0.037 0.049 boundary 0.0
17 fp_D Q08358 323 TRWETEDVFFTFMLKS                  CCCCCCHHHHHHHHHH c1d-AT-4 multi 0.014 0.037 0.049 boundary 0.0
18 fp_O Q08358 328 EDVFFTFMLKSMAAKI                  CHHHHHHHHHHHHHHH c1aR-4 multi-selected 0.015 0.016 0.026 ORD 0.0
19 fp_D Q08358 331 FFTFMLKSMAAKIFIVL                   HHHHHHHHHHHHHHHHH c1c-5 multi-selected 0.015 0.011 0.018 boundary 0.0
20 fp_D Q08358 332 FTFMLKSMAAKIFIVLG                   HHHHHHHHHHHHHHHHH c1c-AT-4 multi 0.015 0.011 0.017 boundary 0.0
21 fp_D Q08358 332 FTFMLKSMAAKIFIVL                  HHHHHHHHHHHHHHHH c1aR-5 multi-selected 0.016 0.011 0.016 boundary 0.0
22 fp_D Q08358 332 FTFMLKSMAAKIFIVL                  HHHHHHHHHHHHHHHH c1a-AT-4 multi 0.016 0.011 0.016 boundary 0.0
23 fp_D Q08358 332 FTFMLKSMAAKIFIVL                  HHHHHHHHHHHHHHHH c1d-4 multi 0.016 0.011 0.016 boundary 0.0
24 fp_D Q08358 335 MLKSMAAKIFIVLGIYD                   HHHHHHHHHHHHHHCCC c1c-5 multi-selected 0.015 0.011 0.013 boundary 0.0
25 fp_D Q08358 335 MLKSMAAKIFIVLG                HHHHHHHHHHHHHH c2-AT-5 multi 0.016 0.01 0.012 boundary 0.0
26 fp_D Q08358 335 MLKSMAAKIFIVLG                HHHHHHHHHHHHHH c3-4 multi-selected 0.016 0.01 0.012 boundary 0.0
27 fp_D Q08358 336 LKSMAAKIFIVLGIYD                  HHHHHHHHHHHHHCCC c1a-AT-4 multi 0.016 0.011 0.013 boundary 0.0
28 fp_D Q08358 336 LKSMAAKIFIVLGIYD                  HHHHHHHHHHHHHCCC c1d-AT-4 multi 0.016 0.011 0.013 boundary 0.0
29 fp_D Q08358 337 KSMAAKIFIVLGIYD                 HHHHHHHHHHHHCCC c1b-AT-4 multi 0.015 0.011 0.013 boundary 0.0
30 fp_D Q08358 342 KIFIVLGIYDMFERPE                  HHHHHHHCCCCCCCCC c1aR-4 multi-selected 0.014 0.023 0.024 boundary 0.0

*candidates: NES candidates and false positives annotated with "cand" and "fp", respectively;
                if the segment is located in the disordered or boundary region, flagged with "D"; if the segment is located in the ordered region, flagged with "O";
                if the segment's beta-strand content is over 0.5, flagged with "beta".
*sequence: Hydrophobic positions are colored in red. The positions with the experimental evidence is marked with '*' (mutation) and '+' (functional sequence in NESdb or sites in validNES).
                The positions with '.' are for the region annotated in the long (more than 25 residues) functional sequence or site.
*multi-pattern: the consensus pattern is unique or multiple within the region (if the start# difference is less than 5, the segments are considered to be the same region)
*diso: average DISOPRED3-predicted disorder propensity for the segment
*spotd: average SPOT-Disorder-predicted disorder propensity for the segment
*iup: average IUPRED2A-predicted disorder propensity for the segment
*loc_DISO: location of the segment with respect to the ordered/disordered regions
*loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
*beta: beta-strand content in the middle of the segment