Q13148 | TAR DNA-binding protein 43   proviz   swissmodel

*Experimental: mutation (blue); functional region (cyan); located in the long functional sequence (lightblue)
*NES patterns: region with experimental evidence (red-orange-yellow); false positive region (gray)


# candidates id start# sequence secondary class multi-pattern diso spotd iup loc_DISO loc_CDD beta
1 fp_D Q13148 24 GTVLLSTVTAQFPGAC                  CCEEECCCCCCCCCCC c1aR-4 uniq 0.056 0.043 0.315 boundary 0.143
2 fp_D Q13148 43 YRNPVSQCMRGVRLVE                  CCCCCCCCCCCEEECC c1a-4 uniq 0.042 0.034 0.259 boundary 0.0
3 fp_D Q13148 96 VKRAVQKTSDLIVLGL                  CCCCCCCCCCEEEECC c1d-AT-4 multi-selected 0.335 0.217 0.287 DISO boundary|RRM1_TDP43; 0.143
4 fp_D Q13148 96 VKRAVQKTSDLIVLG                 CCCCCCCCCCEEEEC c1b-AT-4 multi-selected 0.35 0.228 0.284 DISO boundary|RRM1_TDP43; 0.143
5 fp_beta_D Q13148 99 AVQKTSDLIVLGLPW                 CCCCCCCEEEECCCC c1b-AT-5 multi-selected 0.248 0.141 0.264 DISO boundary|RRM1_TDP43; 0.571
6 fp_D Q13148 120 LKEYFSTFGEVLMVQ                 HHHHHHCCCCEEEEE c1b-4 multi 0.152 0.025 0.15 boundary boundary|RRM1_TDP43; 0.143
7 fp_D Q13148 120 LKEYFSTFGEVLMVQV                  HHHHHHCCCCEEEEEE c1d-4 multi 0.152 0.024 0.158 boundary boundary|RRM1_TDP43; 0.143
8 fp_D Q13148 122 EYFSTFGEVLMVQVKK                  HHHHCCCCEEEEEEEC c1a-AT-4 multi-selected 0.142 0.023 0.162 boundary boundary|RRM1_TDP43; 0.429
9 fp_beta_D Q13148 123 YFSTFGEVLMVQVKK                 HHHCCCCEEEEEEEC c1b-5 multi 0.136 0.022 0.16 boundary boundary|RRM1_TDP43; 0.571
10 fp_beta_D Q13148 128 GEVLMVQVKKDLKTGH                  CCEEEEEEECCCCCCC c1aR-4 multi-selected 0.129 0.047 0.167 boundary MID|RRM1_TDP43; 0.714
11 fp_O Q13148 218 MDVFIPKPFRAFAFVT                  EEEECCCCCCCEEEEE c1a-4 multi-selected 0.016 0.016 0.109 ORD MID|RRM2_TDP43; 0.0
12 fp_beta_O Q13148 222 IPKPFRAFAFVTFAD                 CCCCCCCEEEEECCC c1b-4 multi 0.016 0.018 0.108 ORD MID|RRM2_TDP43; 0.571
13 cand_beta_D Q13148 244 CGEDLIIKGISVHI     ***        HCCCEEECCEEEEE c2-4 multi-selected 0.015 0.033 0.279 boundary boundary|RRM2_TDP43; 0.571
14 cand_beta_D Q13148 246 EDLIIKGISVHISNAE   ***            CCEEECCEEEEEEECC c1aR-4 multi-selected 0.038 0.049 0.353 boundary boundary|RRM2_TDP43; 0.714
15 fp_D Q13148 307 MGGGMNFGAFSINP                CCCCCCCCCCCCCH c2-4 uniq 0.2 0.084 0.397 DISO 0.0

*candidates: NES candidates and false positives annotated with "cand" and "fp", respectively;
                if the segment is located in the disordered or boundary region, flagged with "D"; if the segment is located in the ordered region, flagged with "O";
                if the segment's beta-strand content is over 0.5, flagged with "beta".
*sequence: Hydrophobic positions are colored in red. The positions with the experimental evidence is marked with '*' (mutation) and '+' (functional sequence in NESdb or sites in validNES).
                The positions with '.' are for the region annotated in the long (more than 25 residues) functional sequence or site.
*multi-pattern: the consensus pattern is unique or multiple within the region (if the start# difference is less than 5, the segments are considered to be the same region)
*diso: average DISOPRED3-predicted disorder propensity for the segment
*spotd: average SPOT-Disorder-predicted disorder propensity for the segment
*iup: average IUPRED2A-predicted disorder propensity for the segment
*loc_DISO: location of the segment with respect to the ordered/disordered regions
*loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
*beta: beta-strand content in the middle of the segment